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Grants and Funding: Extramural Programs (EP)

Fiscal Year 2009 Awards

Below is a list of new and continuing grant awards made by NLM in fiscal year 2009. The list is sorted by grant program. Multi-year projects will appear each year in which funds are awarded. New investigators are investigators who have not previously received a significant NIH independent research grant. Early Stage investigators are new investigators in the first 10 years of their research career. Click the grant number to read the abstract and other information about a grant.

Grant Programs

Research Projects (R01)

Albright, Lisa Cannon
Analysis of the Familial Component to Disease in a Biomedical Resource with Linked Genealogy
5R01LM009331-03
University of Utah

Altman, Russ Biagio
Annotating Functional Sites in 3D Biological Structures
2R01LM005652-14
Stanford University

Altman, Russ Biagio
Annotating Functional Sites in 3D Biological Structures
3R01LM005652-14S1
Stanford University

Ash, Joan S
Clinical Decision Support in Community Hospitals: Barriers & Facilitators
2R01LM006942-07A2
Oregon Health and Science University

Bahar, Ivet
Bridging Sequence Patterns and Structural Dynamics
5R01LM007994-06
University of Pittsburgh at Pittsburgh

Bennett, Kristin P
Discovering Hidden Groups Across Tuberculosis Patient and Pathogen Genotype Data
5R01LM009731-02
Rensselaer Polytechnic Institute

Bennett, Kristin P
Discovering Hidden Groups Across Tuberculosis Patient and Pathogen Genotype Data
3R01LM009731-02S1
Rensselaer Polytechnic Institute

Bennett, Kristin P
Discovering Hidden Groups Across Tuberculosis Patient and Pathogen Genotype Data
3R01LM009731-02S2
Rensselaer Polytechnic Institute

Benos, Panagiotis V
Modeling in vivo Protein-DNA Interactions from High-Throughput Data MP1/1
5R01LM009657-03
University of Pittsburgh at Pittsburgh

Benos, Panagiotis V
Modeling in vivo Protein-DNA Interactions from High-Throughput Data MP1/1
3R01LM009657-03S1
University of Pittsburgh at Pittsburgh

Brem, Harold
Diabetic Foot and Pressure Ulcer Databank
3R01LM008443-04S1
New York University School of Medicine

Brem, Harold
Diabetic Foot and Pressure Ulcer Databank
3R01LM008443-04S2
New York University School of Medicine

Bry, Lynn
Crimson - i2b2 Integration For High-Throughput, Scalable Sample Collection
1R01LM010100-01
Brigham And Women's Hospital

Butte, Atul J
Integrating Microarray and Proteomic Data by Ontology-based Annotation
5R01LM009719-02
Stanford University

Carroll, Aaron E
Computer Decision Aid for ADHD Management (CDAAM)
1R01LM010031-01
Indiana Univ-Purdue Univ at Indianapolis

Chapman, Wendy W
NLP Foundational Studies & Ontologies for Syndromic Surveillance from ED Reports
5R01LM009427-03
University of Pittsburgh at Pittsburgh

Chapman, Wendy W
NLP Foundational Studies & Ontologies for Syndromic Surveillance from ED Reports
3R01LM009427-03S1
University of Pittsburgh at Pittsburgh

Chapman, Wendy W
NLP Foundational Studies & Ontologies for Syndromic Surveillance from ED Reports
7R01LM009427-04
University of California San Diego

Chapman, Wendy W
NLP Foundational Studies & Ontologies for Syndromic Surveillance from ED Reports
3R01LM009427-04S1
University of California San Diego

Cohen, Aaron M
Assisting Systematic Review Preparation Using Automated Document Classification
5R01LM009501-03
Oregon Health and Science University

Cooper, Gregory F
Predicting Patient Outcomes from Clinical and Genome-Wide Data
1R01LM010020-01
University of Pittsburgh at Pittsburgh

Craven, Mark W
Adaptive Information Monitoring and Extraction
5R01LM007050-06
University of Wisconsin Madison

Crowley, Rebecca S
Computational Methods for Personalized and Adaptive Cognitive Training
2R01LM007891-05
University of Pittsburgh at Pittsburgh

Das, Amarendra K
Open-Source Toolkit for Knowledge-Based Querying of Time-Oriented Data
1R01LM009607-01A2
Stanford University

Dee, Fred R
Competencies Training & Assessment in Laboratory Medicine Using Patient Simulations
5R01LM009121-03
University of Iowa

Effken, Judith A
DyNADS: A Dynamic Network Analysis Decision Support Tool for Nurse Managers
5R01LM009516-03
University of Arizona

Elhadad, Noemie
An NLP Approach to Generating Patient Record Summaries
1R01LM010027-01
Columbia University Health Sciences

Embi, Peter J
Evaluating EHR-based, Point-of-Care Trial Recruitment Across Clinical Settings
3R01LM009533-01A1S1
Ohio State University

Embi, Peter J
Evaluating EHR-based, Point-of-Care Trial Recruitment Across Clinical Settings
3R01LM009533-01A1S2
Ohio State University

Embi, Peter J
Evaluating EHR-based, Point-of-Care Trial Recruitment Across Clinical Settings
5R01LM009533-02
University of Cincinnati

Floudas, Christodoulos Achilleus
Peptide and Protein Identification via Tandem MS and Mixed-Integer Optimization
5R01LM009338-03
Princeton University

Foran, David J
Image Mining for Comparative Analysis of Expression Patterns in Tissue Microarray
3R01LM009239-02S1
Univ of Med/Dent NJ-R W Johnson Med Sch

Foran, David J
Image Mining for Comparative Analysis of Expression Patterns in Tissue Microarray
5R01LM009239-03
Univ of Med/Dent NJ-R W Johnson Med Sch

Foran, David J
Image Mining for Comparative Analysis of Expression Patterns in Tissue Microarray
3R01LM009239-03S2
Univ of Med/Dent NJ-R W Johnson Med Sch

Friedman, Carol
Pharmacovigilence using Natural Language Processing, Statistics, and the EHR
1R01LM010016-01
Columbia University Health Sciences

Friedman, Carol
Pharmacovigilence using Natural Language Processing, Statistics, and the EHR
3R01LM010016-01S1
Columbia University Health Sciences

Friedman, Carol
Pharmacovigilence using Natural Language Processing, Statistics, and the EHR
3R01LM010016-01S2
Columbia University Health Sciences

Garner, Harold R
Duplicate Article/Plagiarism Discovery
3R01LM009758-02S1
University of Texas SW Med Ctr/Dallas

Garner, Harold R
Duplicate Article/Plagiarism Discovery
3R01LM009758-02S2
University of Texas SW Med Ctr/Dallas

Garner, Harold R
Duplicate Article/Plagiarism Discovery
3R01LM009758-03S1
Virginia Polytechnic Inst and St Univ

Garner, Harold R
Duplicate Article/Plagiarism Discovery
3R01LM009758-03S2
Virginia Polytechnic Inst and St Univ

Graur, Dan
Error Correction in Multiple Sequence Alignments
1R01LM010009-01
University of Houston

Griswold, William G
WIISARD SAGE: Self-Scaling Systems for Mass Casualty Management
1R01LM009522-01A1
University of California San Diego

Guo, Nancy Lan
A Novel Computational Framework for Individualized Clinical Decision-Making
5R01LM009500-02
West Virginia University

Gurcan, Metin Nafi
OAMiner: Integrative Knowledge Anchored Hypothesis Discovery
1R01LM010119-01
Ohio State University

Hauskrecht, Milos
Using Medical Records Repositories to Improve the Alert System Design
1R01LM010019-01A1
University of Pittsburgh at Pittsburgh

Hripcsak, George M
Discovering and Applying Knowledge in Clinical Databases
3R01LM006910-09S1
Columbia University Health Sciences

Hripcsak, George M
Discovering and Applying Knowledge in Clinical Databases
2R01LM006910-10
Columbia University Health Sciences

Hunter, Lawrence E
Technology Development for a MolBio Knowledge-base
5R01LM008111-05
University of Colorado Denver

Hunter, Lawrence E
Biomedical Language Processing Writ Large: Scaling to all of PubMedCentral
2R01LM009254-04
University of Colorado Denver

Ilyin, Valentin A
Accurate Protein Structural Comparisons by TOPOFIT
5R01LM009519-02
Northeastern University

Jagadish, HV
Literature and Data Driven Hypothesis Generation for  High Through put Experiments
1R01LM010138-01
University of Michigan at Ann Arbor

Kalet, Adina Luba
Randomized Trial of Educational Outcomes of Web Initiative in Surgical Education
5R01LM009538-02
New York University School of Medicine

Karp, Peter D
Pathway Prediction and Assessment Integrating Multiple Evidence Types
5R01LM009651-03
Sri International

Kohane, Isaac S
GPing: Informatics for Personal Control of Genomic Data
5R01LM009375-03
Children's Hospital Boston

Kohane, Isaac S
Preventing the Incidentalome
1R01LM010125-01
Harvard University (Medical School)

Krauthammer, Michael
Advancing Literature Mining through Image Processing and Analysis
1R01LM009956-01A1
Yale University

Li, Jing
Multi-Point and Multi-Locus Analysis of Genomic Association Data
2R01LM008991-04
Case Western Reserve University

Liu, Hongfang
Onto-BioThesaurus: Ontological Representation of Gene/Protein Names for Biomedical Literature Mining 
1R01LM009959-01A1
Georgetown University

Lu, Guoqing
A Computational Genotyping System for  Improved Influenza Surveillance
1R01LM009985-01A1
University of Nebraska Omaha

Lu, Xinghua
Automatic Literature-based Protein Annotation
3R01LM009153-02S1
Medical University of South Carolina

Lu, Xinghua
Automatic Literature-based Protein Annotation
5R01LM009153-03
Medical University of South Carolina

Lu, Xinghua
Automatic Literature-based Protein Annotation
3R01LM009153-03S1
Medical University of South Carolina

Lu, Xinghua
Automatic Literature-based Protein Annotation
7R01LM009153-04
University of Pittsburgh at Pittsburgh

Lu, Xinghua
Automatic Literature-based Protein Annotation
3R01LM009153-04S1
University of Pittsburgh at Pittsburgh

Lu, Xinghua
Statistical Methods for Integromics Discoveries
1R01LM010144-01
Medical University of South Carolina

Malin, Bradley A
Technologies to Enable Privacy in Biomedical Databanks
1R01LM009989-01A1
Vanderbilt University

Malin, Bradley A
Automated Detection of Anomalous Accesses to Electronic Health Records
1R01LM010207-01
Vanderbilt University

Mandl, Kenneth D
Disease Surveillance in Real Time: Geotemporal Methods
5R01LM007677-07
Children's Hospital Boston

Mandl, Kenneth D
Disease Surveillance in Real Time: Geotemporal Methods
3R01LM007677-07S1
Children's Hospital Boston

Mendonca, Eneida A
Answering Information Needs in Workflow
3R01LM008799-03S1
University of Chicago

Miller, Randolph A
MOMENT (Monitoring for Outpatient Medication Effects and New Toxicities) in TIME
5R01LM007995-06
Vanderbilt University

Mooney, Sean David
Informatic Profiling of Clinically Relevant Mutation
3R01LM009722-03S1
Buck Institute for Research on Aging

Mooney, Sean David
Informatic Profiling of Clinically Relevant Mutation
5R01LM009722-04
Buck Institute for Research on Aging

Mooney, Sean David
Informatic Profiling of Clinically Relevant Mutation
3R01LM009722-04S1
Buck Institute for Research on Aging

Moore, Jason H
Machine Learning Prediction of Cancer Susceptibilfity
3R01LM009012-03S1
Dartmouth College

Moore, Jason H
Machine Learning Prediction of Cancer Susceptibility
3R01LM009012-03S2
Dartmouth College

Moore, Jason H
Machine Learning Prediction of Cancer Susceptibility
5R01LM009012-04
Dartmouth College

Moore, Jason H
Bioinformatics Strategies for Genome-Wide Association Studies
1R01LM010098-01
Dartmouth College

Moriyama, Etsuko
Efficient and Sensitive Mining System for G-Protein Coupled Receptors
3R01LM009219-02S1
University of Nebraska Lincoln

Moriyama, Etsuko
Efficient and Sensitive Mining System for G-Protein Coupled Receptors
5R01LM009219-03
University of Nebraska Lincoln

Moult, John
Analysis of the Functional Impact of Coding Region SNPs
5R01LM007174-08
University of MD Biotechnology Institute

Nakhleh, Luay
Evolutionary Analysis of Bacterial Genomes: High-Throughput Computational Tools
5R01LM009494-02
Rice University

Ohno-Machado, Lucila
Assessing Quality of Individual Predictions in Medical Decision Support Systems
5R01LM009520-03
Brigham and Women's Hospital

Ohno-Machado, Lucila
Assessing Quality of Individual Predictions in Medical Decision Support Systems
7R01LM009520-04
University of California San Diego

Ohno-Machado, Lucila
Assessing Quality of Individual Predictions in Medical Decision Support Systems
3R01LM009520-04S1
University of California San Diego

Pakhomov, Serguei VS
Sematic Relatedness for Active Medication Safety and Outcomes Surveillance
3R01LM009623-01A2S1
University of Minnesota Twin Cities

Pakhomov, Serguei VS
Sematic Relatedness for Active Medication Safety and Outcomes Surveillance
5R01LM009623-02
University of Minnesota Twin Cities

Pani, John R
Histological Reasoning: Visual Cognition in Microanatomy
3R01LM008323-04S1
University of Louisville

Pani, John R
Histological Reasoning: Visual Cognition in Microanatomy
3R01LM008323-04S2
University of Louisville

Pearson, William R
Comparison of Protein Sequences and Structures
5R01LM004969-20
University of Virginia Charlottesville

Perl, Yehoshua
Partitioning to Support Auditing and Extending the UMLS
3R01LM008445-03S1
New Jersey Institute of Technology

Perl, Yehoshua
Partitioning to Support Auditing and Extending the UMLS
3R01LM008445-03S2
New Jersey Institute of Technology

Perl, Yehoshua
Taxonomies Supporting Orientation, Navigation and Auditing of Terminologies
5R01LM008912-03
New Jersey Institute of Technology

Perl, Yehoshua
Taxonomies Supporting Orientation, Navigation and Auditing of Terminologies
3R01LM008912-03S1
New Jersey Institute of Technology

Peterson, Josh F
Information Systems for Detecting and Managing Acute Kidney Injury
5R01LM009965-02
Vanderbilt University

Pratt, Wanda
Managing Health Information in Your Life
5R01LM009143-03
University of Washington

Pratt, Wanda
Managing Health Information in Your Life
3R01LM009143-03S1
University of Washington

Pratt, Wanda
Managing Health Information in Your Life
3R01LM009143-03S2
University of Washington

Quackenbush, John
TM4: Software for High-Dimensional Data Analysis
5R01LM008795-04
Dana-Farber Cancer Institute

Quackenbush, John
Integrated Approaches to Deriving Predictive Networks from Public Data Sources
1R01LM010129-01
Dana-Farber Cancer Institute

Rabadan, Raul
Integrated Discovery and Hypothesis Testing of New Associations in Rare Diseases
1R01LM010140-01
Columbia University Health Sciences

Reis, Ben Y
Intelligent Histories: Detecting Personalized Risk with Longitudinal Surveillance
1R01LM009879-01A1
Children's Hospital Boston

Resnic, Frederic S
An Automated System to Monitor Medical Device Safety
5R01LM008142-07
Brigham And Women's Hospital

Ritchie, Marylyn D
Analysis Tool for Heritable and Envirnonmental Network Associations
1R01LM010040-01
Vanderbilt University

Rosenberg, Michael S
Sequence Alignment Fidelity in Genomics and Bioinformatics
1R01LM009505-01A1
Arizona State University-Tempe Campus

Rosenbloom, Samuel T
A Framework Based Clinical Documentation Evaluation Method
5R01LM009591-02
Vanderbilt University

Rost, Burkhard
Improve Predictions of Structure and Function by PredictProtein
5R01LM007329-07 
Columbia University Health Sciences

Rzhetsky, Andrey
Large-scale Discovery of Scientific Hypotheses; Computation Over Expert Opinions
1R01LM010132-01
University of Chicago

Salzberg, Steven L
Computational Gene Modeling and Genome Sequence Assembly
5R01LM006845-10
University of Maryland College Pk Campus

Salzberg, Steven L
Computational Gene Modeling and Genome Sequence Assembly
3R01LM006845-10S1
University of Maryland College Pk Campus

Salzberg, Steven L
Computational Gene Modeling and Genome Sequence Assembly
3R01LM006845-10S2
Johns Hopkins University

Sarkar, Indra N
Enhancing Organism Based Disease Knowledge via Name Based Taxonomic Intelligence
5R01LM009725-02
Marine Biological Laboratory

Schadow, Gunther
Clinical Knowledge Hub - Conceptual Integration of Rules, Data Sets, and Queries
1R01LM009897-01A1
Indiana Univ-Purdue Univ at Indianapolis

Schneeweiss, Sebastian G
Analyzing Complex Healthcare Data to Determine Causality of Observed Drug Effects
1R01LM010213-01
Brigham and Women's Hospital

Shavlik, Jude W
Machine Learning and Visualization in Structural Biology
5R01LM008796-04
University of Wisconsin Madison

Shiffman, Richard N
Improving Guideline Development and Implementation
5R01LM007199-06
Yale University

Sim, Ida
The Trial Bank Project
5R01LM006780-10
University of California San Francisco

Szolovits, Peter
Capturing Patient-Provider Encounter through Text Speech and Dialogue Processing
5R01LM009723-02
Massachusetts Institute of Technology

Szolovits, Peter
Capturing Patient-Provider Encounter through Text Speech and Dialogue Processing
3R01LM009723-02S1
Massachusetts Institute of Technology

Taira, Ricky K
Data Structuring and Visualization System for Neuro-oncology
1R01LM009961-01
University of California Los Angeles

Tonellato, Peter J
Method for Prediction of Efficacy of Genetic-Based Prediction Models of Personalized Medicine with Clinical Avatars 
1R01LM010130-01
Harvard University (Medical School)

Verspoor, Karin Maria
Automated Literature Mining for Validation of High-Throughput Function Prediction
1R01LM010120-01
University of Colorado Denver

Waddell, Peter J
Comparative Bioinformatics and TP53 Expression
3R01LM008626-05S1
Purdue University West Lafayette

Waddell, Peter J
Comparative Bioinformatics and TP53 Expression
5R01LM008626-06
Purdue University West Lafayette

Wagner, Michael Matthew
Decision Making in Biosurveillance
5R01LM009132-02
University of Pittsburgh at Pittsburgh

Weng, Chunhua
Bridging the Semantic Gap Between Research Eligibility Criteria and Clinical Data
1R01LM009886-01A1
Columbia University Health Sciences

Wong, Stephen TC
Neuronal Spines Tracking and Analysis for Time-Lapse, 3D Optical Microscopy
5R01LM009161-04
Methodist Hospital Research Institute

Wong, Stephen TC
Neuronal Spines Tracking and Analysis for Time-Lapse, 3D Optical Microscopy
3R01LM009161-04S1
Methodist Hospital Research Institute

Xu, Xie George
4D Visible Human Modeling for Radiation Dosimetry
5R01LM009362-03
Rensselaer Polytechnic Institute

Xu, Xie George
4D Visible Human Modeling for Radiation Dosimetry
3R01LM009362-03S1
Rensselaer Polytechnic Institute

Yu, Hong
HERMES - Help Physicians to Extract and aRticulate Multimedia Information from literature to answer their ad-hoc medical quEstionS 
3R01LM009836-02S1
University of Wisconsin Milwaukee

Yu, Hong
HERMES - Help Physicians to Extract and aRticulate Multimedia Information from literature to answer their ad-hoc medical quEstionS 
5R01LM009836-03
University of Wisconsin Milwaukee

Zeng, Qing
Improve Discharge Instruction through Automated Pictograph Enhancement
1R01LM009966-01A1
University of Utah

Zhou, Xiaobo
System Biology Approach for Signaling Transduction Study of Complex Phenotypes
1R01LM010185-01
Methodist Hospital Research Institute

Zhou, Xiaobo
System Biology Approach for Signaling Transduction Study of Complex Phenotypes
1R01LM010185-01
Methodist Hospital Research Institute

Top

Exploratory/Developmental Grants (R21)

Aronsky, Dominik
An Informatics-Based Guideline Implementation Framework for Asthma Care
5R21LM009747-02
Vanderbilt University

Blalock, Travis N
Wireless Real-Time Monitoring of Research Animals
1R21LM009763-01
University of Virginia Charlottesville

Broderick, Joan E
Psychogenic Illness in Response to Pandemic or Mass Biological Exposure: Development of an Experimental Model
1R21LM009819-01A1
State University New York Stony Brook

Ceusters, Werner M
Realism-based Versioning for Biomedical Ontologies
1R21LM009824-01A1
State University of New York at Buffalo

Clermont, Gilles
Quantitative, Model-based Medical Decision support by Bayesian Inference
1R21LM009936-01A1
University of Pittsburgh at Pittsburgh

Ganz, Aura
DIORAMA: Dynamic Information Collection and Resource Tracking Architecture
5R21LM008942-02
University of Massachusetts Amherst

Hazlehurst, Brian L
Investigating the Generalizability of Natural Language Processing of EMR Data
3R21LM009728-01A1S1
Kaiser Foundation Research Institute

Hazlehurst, Brian L
Investigating the Generalizability of Natural Language Processing of EMR Data
5R21LM009728-02
Kaiser Foundation Research Institute

Hurdle, John F
POET: Consolidated, Comprehensive Clinical Text Preprocessing
3R21LM009967-01S1
University of Utah

Hurdle, John F
POET: Consolidated, Comprehensive Clinical Text Preprocessing
5R21LM009967-02
University of Utah

Kim, Seungchan
Integrating Genomic Data and Biological Knowledge to Learn Context-Specific Gene
5R21LM009706-02
Arizona State University-Tempe Campus

Kim, Seungchan
Integrating Genomic Data and Biological Knowledge to Learn Context-Specific Gene
3R21LM009706-02S2
Arizona State University-Tempe Campus

Logan, Judith R
Exploiting the User Interface for Data Integration in Effectiveness Research
1R21LM009550-01A1
Oregon Health And Science University

Medvedovic, Mario
Integrative Probabilistic Models for Identifying Transcriptional Modules
5R21LM009662-02
University of Cincinnati

Ochs, Michael F
An Open-Source Algorithm Isolating Overlapping Signatures in Microarray Data
3R21LM009382-01A2S1
Johns Hopkins University

Ochs, Michael F
An Open-Source Algorithm Isolating Overlapping Signatures in Microarray Data
5R21LM009382-02
Johns Hopkins University

Pustejovsky, James
Temporal Processing for Medical Discharge Summaries
1R21LM009633-01A2
Brandeis University

Wang, Yu-Ping
A New Paradigm for Integrated Analysis of Multiscale Genomic Imaging Datasets
1R21LM010042-01
University of Missouri Kansas City

Zhu, Dongxiao
A New Informatics Paradigm for Reconstructing Signaling Pathways in Human Disease
1R21LM010137-01
Louisiana State Univ-Univ of New Orleans

Top

Small Research Projects (R03)

Alexov, Emil Georgiev
The Effect of Single Nucleotide Polymorphisms on Protein Structure and Interactions: Application to Spearmine Synthase Gene 
1R03LM009748-01A2
Clemson University

Archer, Kellie J
Recursive Partitioning and Ensemble Methods for Classifying an Ordinal Response
5R03LM009347-02
Virginia Commonwealth University

Archer, Kellie J
Recursive Partitioning and Ensemble Methods for Classifying an Ordinal Response
3R03LM009347-02S1
Virginia Commonwealth University

Crangle, Colleen Elizabeth
Beyond Information Extraction: Identifying Gene Ontology Concepts in Text
1R03LM009752-01
Converspeech, LLC

Fetters, Michael Derwin
Medical Marvels Interactive Translational Research Experience (MITRE)
3R03LM010052-01S1
University of Michigan at Ann Arbor

Fetters, Michael Derwin
Medical Marvels Interactive Translational Research Experience (MITRE)
5R03LM010052-02
University of Michigan at Ann Arbor

Lok, Benjamin
Immersive Virtual Patients with Abnormal Clinical Conditions for Medical Student
5R03LM009646-02
University of Florida

Lok, Benjamin
Immersive Virtual Patients with Abnormal Clinical Conditions for Medical Student
3R03LM009646-02S1
University of Florida

Lok, Benjamin
Immersive Virtual Patients with Abnormal Clinical Conditions for Medical Student
3R03LM009646-02S1
University of Florida

Ma, Shuangge
Effective Clustering Penalized Methods for Genomic Biomarker Selection
1R03LM009754-01A1
Yale University

Ma, Shuangge
Efficient Microarray Meta Analysis and Cancer Biomarker Selection
5R03LM009828-02
Yale University

Prihod, Kevin F
Medical Marvels Interactive Translational Research Experience (MITRE)
5R03LM010053-02
Detroit Science Center

Rodin, Andrei
Multivariate Analysis of Candidate Blood Pressure Response Genes in Hypertensives
1R03LM009738-01A1
University of Texas Hlth Sci Ctr Houston

Rost, Burkhard
Novel Method to Identify Competing Protein-Protein Binders
1R03LM009739-01
Columbia University Health Sciences

Srivastava, Ranjan
Automatic Generation of Genome-scale Flux Balance Models
5R03LM009753-02
University of Connecticut Storrs

Szallasi, Zoltan
Increasing the Reliability of Clinical Microarray Data Analysis by Systematic Bias Correction 
1R03LM009979-01
Children's Hospital Boston

Wall, Dennis Paul
Building a Framework for Exploration of Orthologs and Evolutionary Distances
3R03LM009261-02S1
Harvard University (Medical School)

Zhao, Zhongming
Investigating CpG Islands in Mammalian Genomes
7R03LM009598-02
Vanderbilt University

Top

National Centers for Biomedical Computing Award (U54)

Kohane, Isaac S
Informatics for Integrating Biology and the Bedside (RMI)
5U54LM008748-06
Brigham and Women's Hospital

Top

Biomedical Informatics Research Resource (P41)

Fidelis, Krzysztof A
Center for Critical Assessment of Structure Prediction
5P41LM007085-10
University of California Davis

Fidelis, Krzysztof A
Platform for Physics-Based Methods in CASP (Comp. Rev. to LM007085)
3P41LM007085-10S1
University of California Davis

Fidelis, Krzysztof A
Center for Critical Assessment of Structure Prediction
3P41LM007085-10S2
University of California Davis

Jurka, Jerzy Wladyslaw
Repbase Update-a Database of Repetitive Sequences
2P41LM006252-12
Genetic Information Research Institute

Jurka, Jerzy Wladyslaw
Repbase Update-a Database of Repetitive Sequences
3P41LM006252-12S1
Genetic Information Research Institute

Markley, John L
Biological Magnetic Resonance Data Bank
2P41LM005799-14
University of Wisconsin Madison

Markley, John L
Biological Magnetic Resonance Databank: Metabolomics/Small Molecule Activities
3P41LM005799-14S1
University of Wisconsin Madison

Markley, John L
Biological Magnetic Resonance Data Bank
3P41LM005799-14S2
University of Wisconsin Madison

Musen, Mark A
A Resource for Biomedical Ontologies and Knowledge Bases
5P41LM007885-07
Stanford University

Roberts, Richard J
REBASE-The Restriction Enzyme Database
5P41LM005800-14
New England Biolabs, Inc.

Roberts, Richard J
REBASE-The Restriction Enzyme Database
3P41LM005800-14S1
New England Biolabs, Inc.

Top

NLM Informatics Conference (R13)

Dunker, Alan Keith
Pacific Symposium on Biocomputing
2R13LM006766-13
Indiana Univ-Purdue Univ at Indianapolis

Huang, Chun-Hsi
Workshop on Biomedical Computations on the Grid
5R13LM008619-05
University of Connecticut Storrs

Kroth, Philip J
Scholarly Communication in Translational Research: Emerging Roles for Librarians
1R13LM010054-01
University of New Mexico

Wong, Stephen TC
Life Science Systems and Applications Workshop
5R13LM009571-04

Top

Knowledge Management/Applied Informatics Grants (G08)

Brownstein, John S
HealthMap: Knowledge Management for Emerging Infectious Disease Intelligence
1G08LM009776-01A2
Children's Hospital Boston

Brownstein, John S
HealthMap: Knowledge Management for Emerging Infectious Disease Intelligence
3G08LM009776-01A2S1
Children's Hospital Boston

Chelico, John David
Web Services for Preventive Health
5G08LM009535-02
New York University School of Medicine

Edgar, Heather JH
The Impact of an Ethnically Diverse, Web-based Case File in Orthodontic Education
3G08LM009381-02S1
University of New Mexico

Edgar, Heather JH
The Impact of an Ethnically Diverse, Web-based Case File in Orthodontic Education
5G08LM009381-03
University of New Mexico

Elhadad, Noemie
Librarian Infobutton Tailoring Environment
5G08LM009376-03
Columbia University Health Sciences

Eppig, Janan T
International Mouse Strain Resource (IMSR)
5G08LM009693-02
Jackson Laboratory

Eppig, Janan T
International Mouse Strain Resource (IMSR)
3G08LM009693-02S1
Jackson Laboratory

Frantsve-Hawley, Julie C
Web-based Resource on Evidence-based Dentistry
5G08LM008956-03
American Dental Association Foundation

Frantsve-Hawley, Julie C
Web-based Resource on Evidence-based Dentistry
3G08LM008956-03S1
American Dental Association Foundation

Gandhi, Rajesh T
eMicrobes: A Digital Library for Learning Infectious Diseases
5G08LM008830-03
Massachusetts General Hospital

Gandhi, Rajesh T
eMicrobes: A Digital Library for Learning Infectious Diseases
3G08LM008830-03S1
Massachusetts General Hospital

Hunter, Lawrence E
Construction of a Full Text Corpus for Biomedical Text Mining
3G08LM009639-02S1
University of Colorado Denver

Hunter, Lawrence E
Construction of a Full Text Corpus for Biomedical Text Mining
5G08LM009639-03
University of Colorado Denver

Liddy, Elizabeth D
Improving Public Health Grey Literature Access for the Public Health Workforce
3G08LM008983-03S1
Syracuse University

Little, Charles Medaris
A Web-based Hospital Computerized Disaster Information and Management System
5G08LM009710-02
University of Colorado Denver

Mandl, Kenneth D
Evolving Clinical Information Libraries: Contextualizing Evidence Based Medicine
3G08LM009778-01A1S1
Harvard University (Medical School)

Mandl, Kenneth D
Evolving Clinical Information Libraries: Contextualizing Evidence Based Medicine
5G08LM009778-02
Harvard University (Medical School)

Norlin, Ernest Charles
Utah Medical Home Web Site Project
3G08LM007680-03S1
University of Utah

Pope, Charlene Ann
Carolinas Conversations: A Multiethnic Digital Corpus of Speech for Older Persons
3G08LM009624-02S1
Medical University of South Carolina

Pope, Charlene Ann
Carolinas Conversations: A Multiethnic Digital Corpus of Speech for Older Persons
5G08LM009624-03
Medical University of South Carolina

Sasner, Michael
Enhancing the JaxMice Database Resource
3G08LM009233-02S1
Jackson Laboratory

Sasner, Michael
Enhancing the JaxMice Database Resource
5G08LM009233-03
Jackson Laboratory

Travers, Debbie A
Adapting Natural Language Processing Tools for Biosurveillance
1G08LM009787-01A1
University of North Carolina Chapel Hill

Walji, Muhammad
Development of an Inter-University Oral Health Research Database
1G08LM010075-01
University of Texas Hlth Sci Ctr Houston

Wong, Stephen TC
AFINITI - An Augmented System for Neuroimaging Followup
3G08LM008937-02S1
Methodist Hospital Research Institute

Wong, Stephen TC
AFINITI - An Augmented System for Neuroimaging Followup
5G08LM008937-03
Methodist Hospital Research Institute

Zaruba, Gergely V
Teleherence: Monitoring/Increasing Treatment Adherence via Web Telecommunications
5G08LM009262-03
University of Texas Arlington

Zaruba, Gergely V
Teleherence: Monitoring/Increasing Treatment Adherence via Web Telecommunications
3G08LM009262-03S1
University of Texas Arlington

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Grants for Scholarly Works in Biomedicine and Health (G13)

Abir-Am, Pnina Geraldine
How Scientists Remember a Major Discovery: History and Memory of DNA Structure
5G13LM008872-03
Independent Scholar -- Abir-Am, Pg

Aronowitz, Robert Alan
History of Health Risks in American Society and Medicine
5G13LM009587-02
University of Pennsylvania

Bu, Liping
Public Health Education and Campaigns in China, 1910-1990
1G13LM009601-01A1
Alma College

Creager, Angela NH
Atoms for Peace and Health: Radioisotopes in Postwar Biomedicine
5G13LM009100-03
Princeton University

Davis, Frederick Rowe
Pesticides and Toxicology: A Century of Environmental Health
5G13LM009606-02
Florida State University

De Vos, Paula Susan
The Craft of Medicine in Colonial Mexico: The Art and Science of the Apothecary
1G13LM010089-01
Paula De Vos

De Vries, Raymond G
Medicine and Medical Science in the Age of Bioethics
5G13LM008781-03
University of Michigan at Ann Arbor

Fairchild, Amy L
The Reach of Ethics: Politics, Bioethics & the Regulation of Social Inquiry
5G13LM009241-02
Columbia University Health Sciences

Foley, Paul
Encephalitis Lethargica and Epidemic Influenza: Forgotten, but not Gone
5G13LM009863-02
University of New South Wales

Halpern, Sydney A
Human Hepatitis Experiments in the United States, 1942-1972
1G13LM010000-01
University of Illinois at Chicago

Kahn, Jonathan
Race in a Bottle: Law, Commerce and the Production of Racial Categories in Biome
1G13LM010073-01
Hamline University

Kisacky, Jeanne
From Pavilions to Skyscrapers: A History of Healthy Hospital Design in New York City
5G13LM009479-02
Individual Award- - Kisacky, Jeanne

Klitzman, Robert L
IRBs: Ethics, Context and Interpretations
1G13LM009996-01
New York State Psychiatric Institute

Lerner, Barron H
Getting Away with Murder? A Social and Cultural History of Drunk Driving
5G13LM009702-02
Columbia University Health Sciences

Matlin, Karl S
A History of Cell Biology from the Perspective of the Signal Hypothesis
1G13LM009860-01A1
University of Chicago

McCusker, Kristine Marie
'Just Enough to Put Him Away Decent': The Management of Death and the Evolution of Public Health Policy in the South, 1918-1945 
1G13LM010074-01
Middle Tennessee State University

Millett, David E
Brain Waves: EEG and the History of Modem Neuroscience
5G13LM009385-03
University of Southern California

Rosner, David
Sidewalk Asylums: A History of Homelessness and Mental Illness in New York and LA
5G13LM009707-02
Columbia University Health Sciences

Ross, Lainie Friedman
Ethical Issues in Living Donor Transplantation
5G13LM009096-03
University of Chicago

Stellman, Jeanne Mager
A Data Resource for the Health and Environmental Consequences of the Vietnam War
5G13LM009137-03
Suny Downstate Medical Center

Tracy, Sarah W
Health Revolutionary: The Life and Science of Ancel Keys
5G13LM009871-02
University of Oklahoma Norman

Voeks, Robert Allen
Roots of Rainforest Medicine
1G13LM009716-01A1
California State University Fullerton

Wall, Barbra Mann
A Comparative History of Twentieth-Century Catholic Hospitals
5G13LM009691-02
University of Pennsylvania

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NIH Pathway to Independence Award (K99/R00)

Alterovitz, Gil
A Holistic Approach to Information Processing for Biomedical Networks
5K99LM009826-02
Children's Hospital Boston

Chang, Jeffrey T
Functional Components of the Rb/E2F and p53 Pathways
5K99LM009837-02
Duke University

Kalpathy-Cramer, Jayashree
Clinical Image Retrieval: User Needs Assessment, Toolbox Development & Evaluation
1K99LM009889-01A1
Oregon Health and Science University

Novak, Laurie L
Patient Safety through Implementation Science: Clinical Work Culture & IT Design
1K99LM010038-01A1
Vanderbilt University

Scotch, Matthew
Informatics for Zoonotic Disease Surveillance: Combining Animal and Human Data
5K99LM009825-02
Yale University

Solti, Imre
Increasing Clinical Trial Enrollment: A Semi-Automated Patient Centered Approach
1K99LM010227-01
University of Washington

Zhang, Zhengdong D
Gene Regulation in Metastasis and New Methods to Analyze its Microarray Profiles
3K99LM009770-02S1
Yale University

Salzman, Peter
Statistical & Computational Tools for Reconstruction of Gene Regulatory Networks
4R00LM009477-02
University of Rochester

Shapiro, Jason Scott
Evaluation of the Impact of Health Information Exchange on Emergency Medicine
4R00LM009556-03 
Columbia University Health Sciences

Shapiro, Jason Scott
Evaluation of the Impact of Health Information Exchange on Emergency Medicine
7R00LM009556-04
Mount Sinai School of Medicine

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University Medical Informatics Research Training Programs (T15)

Altman, Russ Biagio
Graduate Training in Biomedical Informatics
5T15LM007033-26
Stanford University

Altman, Russ Biagio
Graduate Training in Biomedical Informatics
3T15LM007033-26S1
Stanford University

Baldi, Pierre
Biomedical Informatics Training Program
5T15LM007443-08
University of California Irvine

Bass, Ellen J
Systems Engineering Focus on Clinical Informatics
3T15LM009462-03S1
University of Virginia Charlottesville

Bui, Alex
Medical Imaging Informatics Training Program
5T15LM007356-08
University of California Los Angeles

Bui, Alex
Medical Imaging Informatics Training Program
3T15LM007356-08S1
University of California Los Angeles

Bui, Alex
Medical Imaging Informatics Training Program
3T15LM007356-08S2
University of California Los Angeles

Caldwell, Charles W
MU Biomedical Informatics Research Training Program
5T15LM007089-18
University of Missouri-Columbia

Caldwell, Charles W
MU Biomedical Informatics Research Training Program
3T15LM007089-18S1
University of Missouri-Columbia

Crowley, Rebecca S
Pittsburgh Biomedical Informatics Training Program
5T15LM007059-23
University of Pittsburgh at Pittsburgh

Crowley, Rebecca S
Pittsburgh Biomedical Informatics Training Program
3T15LM007059-23S1
University of Pittsburgh at Pittsburgh

Downs, Stephen Miller
Indiana University/Regenstrief Institute Biomedical Informatics Research Training
5T15LM007117-13
Indiana Univ-Purdue Univ at Indianapolis

Gadd, Cynthia S
Vanderbilt Biomedical Informatics Training Program
5T15LM007450-08
Vanderbilt University

Gadd, Cynthia S
Vanderbilt Biomedical Informatics Training Program
3T15LM007450-08S1
Vanderbilt University

Gadd, Cynthia S
Vanderbilt Biomedical Informatics Training Program
3T15LM007450-08S2
Vanderbilt University

Gorry, Tony
NLM Training Program in Biomedical Informatics
5T15LM007093-18
Rice University

Gorry, Tony
NLM Training Program in Biomedical Informatics
3T15LM007093-18S1
Rice University

Guerlain, Stephanie A
Systems Engineering Focus on Clinical Informatics
5T15LM009462-03
University of Virginia Charlottesville

Hersh, William R
Biomedical Informatics Research Training at Oregon Health & Science University
3T15LM007088-17S1
Oregon Health and Science University

Hersh, William R
Biomedical Informatics Research Training at Oregon Health & Science University
3T15LM007088-17S2
Oregon Health and Science University

Hersh, William R
Biomedical Informatics Research Training at Oregon Health & Science University
5T15LM007088-18
Oregon Health and Science University

Hersh, William R
Biomedical Informatics Research Training at Oregon Health & Science University
3T15LM007088-18S1
Oregon Health and Science University

Hripcsak, George M
Training in Biomedical Informatics at Columbia University
3T15LM007079-17S1
Columbia University Health Sciences

Hripcsak, George M
Training in Biomedical Informatics at Columbia University
5T15LM007079-18
Columbia University Health Sciences

Hunter, Lawrence E
Computational Bioscience Program Training Grant
5T15LM009451-03
University of Colorado Denver

Hunter, Lawrence E
Computational Bioscience Program Training Grant
3T15LM009451-03S1
University of Colorado Denver

Lehmann, Harold P
Health Sciences Informatics Research Training Fellowship Program
3T15LM007452-07S1
Johns Hopkins University

Lehmann, Harold P
Health Sciences Informatics Research Training Fellowship Program
5T15LM007452-08
Johns Hopkins University

Lehmann, Harold P
Health Sciences Informatics Research Training Fellowship Program
3T15LM007452-08S1
Johns Hopkins University

McCray, Alexa T
Boston-Area Research Training Program in Biomedical Informatics
5T15LM007092-18
Harvard University (Medical School)

Miller, Perry L
Biomedical Informatics Research Training at Yale
5T15LM007056-23
Yale University

Miller, Perry L
Biomedical Informatics Research Training at Yale
3T15LM007056-23S1
Yale University

Mitchell, Joyce A
University of Utah Biomedical Informatics Training
3T15LM007124-12S1
University of Utah

Mitchell, Joyce A
University of Utah Biomedical Informatics Training
5T15LM007124-13
University of Utah

Mitchell, Joyce A
University of Utah Biomedical Informatics Training
3T15LM007124-13S1
University of Utah

Phillips, George Neal
Research Training for Computation and Informatics in Biology and Medicine
5T15LM007359-08
University of Wisconsin Madison

Tarczy-Hornoch, Peter
Biomedical and Health Informatics Training Program
3T15LM007442-07S1
University of Washington

Tarczy-Hornoch, Peter
Biomedical and Health Informatics Training Program
5T15LM007442-08
University of Washington

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Small Business Innovation Research (SBIR) and Small Business Technology Transfer (STTR) Awards (R41-R44)

Lobach, David F
Software Leveraging a Standards-Based Web Service Framework for Decision Support
3R42LM009051-03S1
Religent, Inc.

Bromberg, Yana
Improved Manuscript Search through PubSeq
1R43LM010156-01
Biosof, Llc

Carney, Donald P
Adapting Mathematical Pen-Computing for Classroom Use on Interactive Whiteboards
1R43LM010746-01A1
Fluidity Software, Inc.

Turner, Wes
Flexible Information Visualization and Analysis Platform for Biomedical Research
1R43LM010245-01
Kitware, Inc.

Zhu, Yuerong
Development of a Highly Automated Microarray Data Analysis System that Allows
3R43LM009913-01A1S1
Bioinforx, Inc.

Zhu, Yuerong
Development of a Highly Automated Microarray Data Analysis System that Allows
5R43LM009913-02
Bioinforx, Inc.

Reininger, Daniel J
Medical Emergency Disaster Response Network
3R44LM008474-03S2
Semandex Networks, Inc.

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Loan Repayment Program for Clinical Researchers (L30)

Duke, Jon D
Improving Management of Adverse Drug Reactions through Data Visualization
1L30LM010166-01 
Loan Repayment Applications

El-Kareh, Robert
An RCT an Automated Alert for Undertreated Post-Dischange Culture Resuilts
1L30LM010164-01 
Loan Repayment Applications

Were, Martin Chieng
Using Information Technology to Improve Patient Care
2L30LM009714-02 
Loan Repayment Applications

Bonafide, Christopher P
Risk Factors for Decompensation in Pediatric Inpatients
1L40LM010168-01 
Loan Repayment Applications

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NIH Challenge Grants (RC1)

Barrett, Jeffrey Scott
Decision Support System to Guide Pediatric Pharmacotherapy
1RC1LM010367-01
Childrens Hospital of Philadelphia

Bates, David W
Refining IT Support for Genetics in Medicine
1RC1LM010526-01
Brigham And Women's Hospital

Cobb, Loren
Improved Tracking for Emerging Diseases from Climate Change
1RC1LM010641-01
University of Colorado Denver

Holmes, John H
Mining Internet Conversation for Evidence of Herbal Association
1RC1LM010342-01
University of Pennsylvania

Kempe, Allison
Population versus Practice-Based Interventions to Increase Immunization Rates
1RC1LM010513-01
University of Colorado Denver

Kulldorff, Martin
Data Mining Electronic Health Records for Drug Adverse Events
1RC1LM010371-01
Harvard Pilgrim Health Care, Inc.

Kulldorff, Martin
Data Mining Electronic Health Records for Drug Adverse Events
1RC1LM010371-01
Harvard Pilgrim Health Care, Inc.

Louwerse, Max
The Importance of Language Characteristics in Documenting Clinical Encounters
1RC1LM010442-01
University of Memphis

Mandl, Kenneth D
Presenting Genome Information in Patient Electronic Records: The Informed Cohort
1RC1LM010470-01
Children's Hospital Boston

Miller, Marlene Rosemary
Improving Childhood Immunization Compliance Using Electronic Health Records
1RC1LM010512-01
Johns Hopkins University

Richesson, Rachel L
Library of Standardized Patient Registry Questions for Rare Diseases
1RC1LM010455-01
University of South Florida

Savova, Guergana
Multi-source Clinical Question Answering System
1RC1LM010608-01
Mayo Clinic

Schneeweiss, Sebastian G
'Stopping Rules' for Drug Safety Monitoring Using Healthcare Databases
1RC1LM010351-01
Brigham And Women's Hospital

Turchin, Alexander
Natural Language Processing to Study Epidemiology of Statin Side Effects
1RC1LM010460-01
Brigham And Women's Hospital

Waldinger, Richard J
Intelligent Question Answering in the HIV Domain (SRI Proposal ECU 09-630)
1RC1LM010583-01
Sri International

Wetzel, Randall C
Advanced Computational Framework for Decision Support in Critically Ill Children
1RC1LM010639-01
Children's Hospital Los Angeles

Wheeler, Arthur P
A Model-integrated, Guideline-driven Process Management System for Sepsis
1RC1LM010310-01
Vanderbilt University

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High Impact Research and Research Infrastructure Programs (RC2)

Moskowitz, Jay
An Open Source Research Permissions Framework for South Carolina
1RC2LM010796-01
University of South Carolina at Columbia

Narus, Scott P
Development of a Statewide Master Person Index
1RC2LM010798-01
University of Utah

Terdiman, Joseph
The Kaiser Permanente National Research Database
1RC2LM010797-01
Kaiser Foundation Research Institute

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Research Grants (RL1)

Parker, Douglass Stott
Hypothesis Web Development for Neuropsychiatric Phenomics (6 of 8)
5RL1LM009833-03
University of California Los Angeles

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Informationist Fellowships (F37)

Brasure, Michelle B
Health Informatics Outreach Training
5F37LM009759-02
College of St. Catherine

Folb, Barbara L
Public Health Informationist Training for Academic Public Health Practice
5F37LM009471-02
University of Pittsburgh at Pittsburgh

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