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Unified Medical Language System® (UMLS®)

2011AA Foundational Model of Anatomy Source Information




Skip to: Atoms, Attributes, Definitions, Relationships, Mappings

VSAB: FMA3_1

Summary of Changes

FMA3_1 inlcudes the following new data types:

Term Types:
IS (suppressible = "O")
OP (suppressible = "O")

RELAs:
articulates_with
adheres_to/has_adherent
has_part/part_of

Hierarchical RELA (previously null):
isa

Attributes:
AAL_TERM
ANATOMICAL_COORDINATE (replaces COORDINATE)
FREESURFER_TERM
NEUROLEX_ID
RADLEX_ID
TALAIRACH
TALAIRACH_ID

The following data types were deleted in FMA3_1:

RELAs:
has_homonym/homonym_for

Attributes:
COORDINATE

The following RELAs were updated due to a spelling error.  This correction resulted in new RUI assignments for existing relationships:
eipthelial_cell_shape_of --> epithelial_cell_shape_of
has_eipthelial_cell_shape --> has_epithelial_cell_shape

Source Provided Files:

To process FMA, fma_3.1_frames_db.sql was loaded into a MySQL database for Protegè.  Protegè's export function was then used to write "classes.fma.pont" and "instances.fma.pins."  The .pins and .pont files were processed for the Metathesaurus.

Identifiers:

Identifiers are assigned as follows:
  • CODE: FMAID
  • SAUI:  Not applicable
  • SCUI: FMAID
  • SDUI: Not applicable

Atoms (MRCONSO):

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Term Type Origin (Slot)
IS
Synonym (children of the concept "Deprecated term" are assigned obsolete term types)
OP
Preferred+name (children of the concept "Deprecated term" are assigned obsolete term types)
PT
Preferred+name
SY
Synonym;  Non-English+equivalent [names with Language=Latin only]

Attributes (MRSAT):


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Attribute Name Origin (Slot)
AAL_TERM
AAL
ADJACENT
adjacent
ANATOMICAL_COORDINATE
anatomical+coordinate
ANATOMICAL_OR_ARBITRARY
anatomical%2Farbitrary
CELL_APPENDAGE_TYPE
cell+appendage+type
CELL_LAYER
cell+layer
CHROMOSOME_PAIRS_PER_NUCLEUS
chromosome+pair+number
CONNECTED_TO
connected+to
CONNECTION_TYPE
connection+type
CONTACT_TYPE
contact+type
DIMENSION
dimension
FREESURFER_TERM
Freesurfer
HAS_BOUNDARY
has+boundary
HAS_MASS
has+mass
LANGUAGE
Non-English+equivalent [names with  Language=Latin only]
LATERALITY
laterality
MUSCLE_INSERTION
muscle+insertion
MUSCLE_ORIGIN
muscle+origin
NEUROLEX_ID
Neurolex
PARTITION
partition
POLARITY
polarity
RADLEX_ID
RadLex+ID
SHAPE_TYPE
has+shape+type
SHARED_OR_UNSHARED
shared%2Funshared
STATE_OF_DETERMINATION
state+of+determination
TALAIRACH
Talairach
TALAIRACH_ID
Talairach+ID
VIEW
view

Definitions (MRDEF):

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Definitions are created from data in the "definition" slot.


Relationships (MRREL):

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REL RELA
Inverse RELA
Origin (Slot)
RO
adheres_to
has_adherent
adheres+to
<inverse slot not present in data>
RO
adjacent_to
adjacent+to
RO
afferent_to
efferent_to
afferent+to
efferent+to
RO
arterial_supply_of
has_arterial_supply
arterial+supply+of
arterial+supply
RO
articulates_with
articulates+with
RO
attaches_to
receives_attachment
attaches+to
receives+attachment
RO
attributed_constitutional_part_of
has_attributed_constitutional_part
<inverse slot not present in data>
attributed+constitutional+part
RO
attributed_continuous_with
attributed+continuous+with
RO
attributed_part_of
has_attributed_part
<inverse slot not present in data>
attributed+part
RO
attributed_regional_part_of
has_attributed_regional_part
<inverse slot not present in data>
attributed+regional+part
RO
bounded_by
bounds
bounded+by
bounds
RO
branch_of
has_branch
branch+of
branch
RO
cell_connecting_part_of
has_cell_connecting_part
<inverse slot not present in data>
cell+connectivity
RO
cell_shape_of
has_cell_shape
<inverse slot not present in data>
cell+shape
RO
cell_surface_specialization_of
has_cell_surface_specialization
<inverse slot not present in data>
cell+surface+specialization
RO
constitutional_part_of
has_constitutional_part
constitutional+part+of
constitutional+part
RO
contained_in
contains
contained+in
contains
RO
continuation_branch_of
has_continuation_branch
<inverse slot not present in data>
branch+%28continuity%29
RO
continuous_with
continuous+with
RO
continuous_with_distally
continuous_with_proximally
continuous+with+distally
continuous+with+proximally
RO
develops_from
gives_rise_to
develops+from
gives+rise+to
RO
epithelial_cell_shape_of
has_epithelial_cell_shape
<inverse slot not present in data>
epithelial+morphology
RO
fascicular_architecture_of
has_fascicular_architecture
<inverse slot not present in data>
fascicular+architecture
RO
germ_origin_of
has_germ_origin
<inverse slot not present in data>
germ+origin
RO
has_inherent_3d_shape
inherent_3d_shape_of
<inverse slot not present in data>
inherent+3-D+shape
RO
has_location
location_of
location
<inverse slot not present in data>
RO
has_lymphatic_drainage
lymphatic_drainage_of
lymphatic+drainage
lymphatic+drainage+of
RO
has_member
member_of_cluster
member
member+of
RO
has_muscle_attachment
muscle_attachment_of
muscle+attachment
<inverse slot not present in data>
RO
has_muscle_insertion
muscle_insertion_of
muscle+inesrtoin
<inverse slot not present in data>
RO
has_muscle_origin
muscle_origin_of
muscle+origin
<inverse slot not present in data>
RO
has_nerve_supply
nerve_supply_of
nerve+supply
nerve+supply+of
RO
has_orientation
orientation_of
orientation
<inverse slot not present in data>
RO
has_origin
origin_of
<inverse slot not present in data>
origin+of
RO
has_part
part_of
part
part+of
RO
has_physical_state
physical_state_of
physical+state
<inverse slot not present in data>
RO
has_primary_segmental_supply
primary_segmental_supply_of
primary+segmental+supply
primary+segmental+supply+of
RO
has_regional_part
regional_part_of
regional+part
regional+part+of
RO
has_secondary_segmental_supply
secondary_segmental_supply_of
secondary+segmental+supply
secondary+segmental+supply+of
RO
has_segmental_composition
segmental_composition_of
segmental+composition
segmental+composition+of
RO
has_segmental_supply
segmental_supply_of
segmental+supply
segmental+supply+of
RO
has_shape
shape_of
has+shape
<inverse slot not present in data>
RO
has_systemic_part
systemic_part_of
systemic+part
systemic+part+of
RO
has_tributary
tributary_of
tributary
tributary+of
RO
has_venous_drainage
venous_drainage_of
venous+drainage
venous+drainage+of
RO
receives_input_from
sends_output_to
receives+input+from, input+from
sends+output+to
RO
surrounded_by
surrounds
surrounded+by
surrounds



Mappings (MRMAP):

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No mappings to external sources are provided for FMA.