Unified Medical Language System® (UMLS®)
2011AA Foundational Model of Anatomy Source Information
VSAB: FMA3_1
Summary of Changes
FMA3_1 inlcudes the following new data types:
IS (suppressible = "O")
OP (suppressible = "O")
OP (suppressible = "O")
RELAs:
articulates_with
adheres_to/has_adherent
has_part/part_of
Hierarchical RELA (previously null):adheres_to/has_adherent
has_part/part_of
isa
AAL_TERM
ANATOMICAL_COORDINATE (replaces COORDINATE)
FREESURFER_TERM
NEUROLEX_ID
RADLEX_ID
TALAIRACH
TALAIRACH_ID
ANATOMICAL_COORDINATE (replaces COORDINATE)
FREESURFER_TERM
NEUROLEX_ID
RADLEX_ID
TALAIRACH
TALAIRACH_ID
RELAs:
has_homonym/homonym_for
Attributes:COORDINATE
The following RELAs were updated due to a spelling error. This
correction resulted in new RUI assignments for existing relationships:eipthelial_cell_shape_of -->
epithelial_cell_shape_of
has_eipthelial_cell_shape --> has_epithelial_cell_shape
has_eipthelial_cell_shape --> has_epithelial_cell_shape
Source Provided Files:
To process FMA, fma_3.1_frames_db.sql was loaded into a MySQL database for Protegè. Protegè's export function was then used to write "classes.fma.pont" and "instances.fma.pins." The .pins and .pont files were processed for the Metathesaurus.Identifiers:
Identifiers are assigned as follows:- CODE: FMAID
- SAUI: Not applicable
- SCUI: FMAID
- SDUI: Not applicable
Atoms (MRCONSO):
)| Term Type | Origin (Slot) |
|---|---|
| IS |
Synonym (children of the concept "Deprecated term" are
assigned obsolete term types) |
| OP |
Preferred+name (children of the concept "Deprecated term" are
assigned obsolete term types) |
| PT |
Preferred+name |
| SY |
Synonym; Non-English+equivalent [names with
Language=Latin only] |
Attributes (MRSAT):
)
| Attribute Name | Origin (Slot) |
|---|---|
| AAL_TERM |
AAL |
| ADJACENT |
adjacent |
| ANATOMICAL_COORDINATE |
anatomical+coordinate |
| ANATOMICAL_OR_ARBITRARY |
anatomical%2Farbitrary |
| CELL_APPENDAGE_TYPE |
cell+appendage+type |
| CELL_LAYER |
cell+layer |
| CHROMOSOME_PAIRS_PER_NUCLEUS |
chromosome+pair+number |
| CONNECTED_TO |
connected+to |
| CONNECTION_TYPE |
connection+type |
| CONTACT_TYPE |
contact+type |
| DIMENSION |
dimension |
| FREESURFER_TERM |
Freesurfer |
| HAS_BOUNDARY |
has+boundary |
| HAS_MASS |
has+mass |
| LANGUAGE |
Non-English+equivalent [names
with Language=Latin only] |
| LATERALITY |
laterality |
| MUSCLE_INSERTION |
muscle+insertion |
| MUSCLE_ORIGIN |
muscle+origin |
| NEUROLEX_ID |
Neurolex |
| PARTITION |
partition |
| POLARITY |
polarity |
| RADLEX_ID |
RadLex+ID |
| SHAPE_TYPE |
has+shape+type |
| SHARED_OR_UNSHARED |
shared%2Funshared |
| STATE_OF_DETERMINATION |
state+of+determination |
| TALAIRACH |
Talairach |
| TALAIRACH_ID |
Talairach+ID |
| VIEW |
view |
Relationships (MRREL):
)| REL | RELA Inverse RELA |
Origin (Slot) |
|---|---|---|
| RO |
adheres_to has_adherent |
adheres+to <inverse slot not present in data> |
| RO |
adjacent_to |
adjacent+to |
| RO |
afferent_to efferent_to |
afferent+to efferent+to |
| RO |
arterial_supply_of has_arterial_supply |
arterial+supply+of arterial+supply |
| RO |
articulates_with |
articulates+with |
| RO |
attaches_to receives_attachment |
attaches+to receives+attachment |
| RO |
attributed_constitutional_part_of has_attributed_constitutional_part |
<inverse slot not present in
data> attributed+constitutional+part |
| RO |
attributed_continuous_with |
attributed+continuous+with |
| RO |
attributed_part_of has_attributed_part |
<inverse slot not present in
data> attributed+part |
| RO |
attributed_regional_part_of has_attributed_regional_part |
<inverse slot not present in
data> attributed+regional+part |
| RO |
bounded_by bounds |
bounded+by bounds |
| RO |
branch_of has_branch |
branch+of branch |
| RO |
cell_connecting_part_of has_cell_connecting_part |
<inverse slot not present in
data> cell+connectivity |
| RO |
cell_shape_of has_cell_shape |
<inverse slot not present in
data> cell+shape |
| RO |
cell_surface_specialization_of has_cell_surface_specialization |
<inverse slot not present in
data> cell+surface+specialization |
| RO |
constitutional_part_of has_constitutional_part |
constitutional+part+of constitutional+part |
| RO |
contained_in contains |
contained+in contains |
| RO |
continuation_branch_of has_continuation_branch |
<inverse slot not present in
data> branch+%28continuity%29 |
| RO |
continuous_with |
continuous+with |
| RO |
continuous_with_distally continuous_with_proximally |
continuous+with+distally continuous+with+proximally |
| RO |
develops_from gives_rise_to |
develops+from gives+rise+to |
| RO |
epithelial_cell_shape_of has_epithelial_cell_shape |
<inverse slot not present in
data> epithelial+morphology |
| RO |
fascicular_architecture_of has_fascicular_architecture |
<inverse slot not present in
data> fascicular+architecture |
| RO |
germ_origin_of has_germ_origin |
<inverse slot not present in
data> germ+origin |
| RO |
has_inherent_3d_shape inherent_3d_shape_of |
<inverse slot not present in
data> inherent+3-D+shape |
| RO |
has_location location_of |
location <inverse slot not present in data> |
| RO |
has_lymphatic_drainage lymphatic_drainage_of |
lymphatic+drainage lymphatic+drainage+of |
| RO |
has_member member_of_cluster |
member member+of |
| RO |
has_muscle_attachment muscle_attachment_of |
muscle+attachment <inverse slot not present in data> |
| RO |
has_muscle_insertion muscle_insertion_of |
muscle+inesrtoin <inverse slot not present in data> |
| RO |
has_muscle_origin muscle_origin_of |
muscle+origin <inverse slot not present in data> |
| RO |
has_nerve_supply nerve_supply_of |
nerve+supply nerve+supply+of |
| RO |
has_orientation orientation_of |
orientation <inverse slot not present in data> |
| RO |
has_origin origin_of |
<inverse slot not present in
data> origin+of |
| RO |
has_part part_of |
part part+of |
| RO |
has_physical_state physical_state_of |
physical+state <inverse slot not present in data> |
| RO |
has_primary_segmental_supply primary_segmental_supply_of |
primary+segmental+supply primary+segmental+supply+of |
| RO |
has_regional_part regional_part_of |
regional+part regional+part+of |
| RO |
has_secondary_segmental_supply secondary_segmental_supply_of |
secondary+segmental+supply secondary+segmental+supply+of |
| RO |
has_segmental_composition segmental_composition_of |
segmental+composition segmental+composition+of |
| RO |
has_segmental_supply segmental_supply_of |
segmental+supply segmental+supply+of |
| RO |
has_shape shape_of |
has+shape <inverse slot not present in data> |
| RO |
has_systemic_part systemic_part_of |
systemic+part systemic+part+of |
| RO |
has_tributary tributary_of |
tributary tributary+of |
| RO |
has_venous_drainage venous_drainage_of |
venous+drainage venous+drainage+of |
| RO |
receives_input_from sends_output_to |
receives+input+from, input+from sends+output+to |
| RO |
surrounded_by surrounds |
surrounded+by surrounds |
Mappings (MRMAP):
)No mappings to external sources are provided for FMA.
