This page lists UMLS Metathesaurus data elements and traces them back to the specific source data that populates them.
VSAB: HGNC2023_04
No changes for this version.
| File Name | Description |
|---|---|
| hgnc_complete_set_04212023.txt | Tab-delimited text file (UTF-8). |
| Term Type | Description | Origin |
|---|---|---|
| ACR | Acronym | symbol field |
| MTH_ACR | Metathesaurus created acronym. The word 'gene' or 'gene cluster' was appended to the atom. | symbol field |
| NA | Alias Name | alias_name field |
| NP | non-preferred term | prev_name field |
| NS | short for of non-preferred term | prev_symbol field |
| PT | Preferred Name | name field |
| SYN | Synonyms | alias_symbol field |
For all term types, suppressibility value 'N' (default value)
| Attribute Name | Origin |
|---|---|
| AGR | agr field |
| CCDS_ID | ccds_id field |
| CYTOGENETIC_LOCATION | location field |
| DATE_CREATED | date_approved_reserved field |
| DATE_LAST_MODIFIED | date_modified field |
| DATE_NAME_CHANGED | date_name_changed field |
| DATE_SYMBOL_CHANGED | date_symbol_changed field |
| DB_XR_ID|COSMIC: | cosmic field |
| DB_XR_ID|MiRBase: | mirbase field |
| DB_XR_ID|HomeoDB: | homeodb field |
| DB_XR_ID|snoRNABase: | snornabase field |
| DB_XR_ID|BioParadigms: | bioparadigms_slc field |
| DB_XR_ID|Orphanet: | orphanet field |
| DB_XR_ID|Pseudogene.org: | pseudogene.org field |
| DB_XR_ID|HORDE_ID: | horde_id field |
| DB_XR_ID|MEROPS: | merops field |
| DB_XR_ID|IMGT/GENE-DB: | imgt field |
| DB_XR_ID|IUPHAR: | iuphar field |
| DB_XR_ID|KZNF Gene Catalog: | kznf_gene_catalog field |
| DB_XR_ID|Mamit-tRNAdb: | mamit-trnadb field |
| DB_XR_ID|CD: | cd field |
| DB_XR_ID|lncRNAdb: | lncrnadb field |
| DB_XR_ID|Intermediate Filament DB: | intermediate_filament_db field |
| DB_XR_ID|GtRNAdb: | gtrnadb field |
| ENA | ena field |
| ENSEMBLGEN_ID | ensembl_gene_id field |
| ENTREZGENE_ID | entrez_id field |
| EZ | enzyme_id field |
| GENE_FAM_DESC | gene_group field |
| GENE_FAM_ID | gene_group_id field |
| GENESYMBOL | symbol field |
| GENCC | gencc field |
| LNCIPEDIA | lncipedia |
| LOCUS_GROUP | locus_group field |
| LOCUS_SPECIFIC_DB_XR | lsdb field |
| LOCUS_TYPE | locus_type field |
| MANE_SELECT | mane_select field |
| MGD_ID | mgd_id field |
| OMIM_NUMBER | omim_id field |
| PMID | pubmed_id field |
| REFSEQ_ID | refseq_accession field |
| RGD_ID | rgd_id field |
| RNA_CENTRAL_ID | rna_central_id |
| MAPPED_UCSC_ID | ucsc_id field |
| SWP | uniprot_ids field |
| VEGA_ID | vega_id field |
| Source | Relationship | Relationship Label/Inverse Relationship Label | Description |
|---|---|---|---|
| HGNC | CHD PAR SIB |
(no rela) | There are no CONTEXTS. |
| HGNC | SFO/LFO | has_expanded_form/expanded_form_of | Connects the symbol (TTY=ACR) with its expanded form (TTY=MTH_ACR). |
| HGNC | SFO/LFO | has_alias/alias_of | Connects the name (TTY=PT) with its alias_symbol (TTY=SYN). |
| HGNC | SFO/LFO | has_prev_symbol/prev_symbol_of | Connects the name (TTY=PT) with its alias_symbol (TTY=NS). |
| HGNC | RT | has_prev_name/prev_name_of | Connects the name (TTY=PT) with its alias_symbol (TTY=NP). |
There are no definitions.
There are no mappings present.