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HGNC (HUGO Gene Nomenclature Committee) - Source Representation


VSAB: HGNC2023_04

Notes

The HUGO Gene Nomenclature Committee (HGNC) is an international organization whose primary ethos is to promote and sustain collaboration in the field of human genetics.

Data is supplied in a single, tab-delimited, text file (UTF-8).


Summary of Changes

No changes for this version.


Summary of Source-Provided Files

Documentation and Reference

http://www.genenames.org/help/statistics-downloads
www.hugo-international.org

Data Files

File NameDescription
hgnc_complete_set_04212023.txtTab-delimited text file.

Source-Provided File Details

Field NumberField NameDescriptionRepresentation
1hgnc_idA unique ID for every approved symbolMRCONSO.CODE; MRCONSO.SCUI
2symbolApproved gene symbolMRCONSO.STR; MRSAT.ATN=GENESYMBOL
3nameApproved name for the geneMRCONSO.STR
4locus_groupA group name for a set of related locus typesMRSAT.ATN=LOCUS_GROUP
5locus_typeSpecifies type as defined by HGNC (e.g., RNA, transfer)MRSAT.ATN=LOCUS_TYPE
6statusStatus of the symbol (e.g., Approved or Entry Withdrawn)Not Processed
7locationCytogenetic location of the geneMRSAT.ATN=CYTOGENETIC_LOCATION
8location_sortableSame as "location" but single digit chromosomes are prefixed with a 0 enabling them to be sorted in correct number order (e.g., 02q34)Not Processed
9alias_symbolOther symbols used to refer to the geneMRCONSO.STR
10alias_nameOther names used to refer to the geneMRCONSO.STR
11prev_symbolSymbols previously approved for this geneMRSAT.ATN=PREV_SYMBOL
12prev_nameGene names previously approved for this geneMRSAT.ATN=PREV_NAME
13gene_groupName given to a gene family or group the gene has been assigned toMRSAT.ATN=GENE_FAM_DESC
14gene_group_idID used to designate a gene family or group the gene has been assigned toMRSAT.ATN=GENE_FAM_ID
15date_approved_reservedThe date the entry was first approvedMRSAT.ATN=DATE_CREATED
16date_symbol_changedThe date the gene symbol was last changedMRSAT.ATN=DATE_SYMBOL_CHANGED
17date_name_changedThe date the gene name was last changedMRSAT.ATN=DATE_NAME_CHANGED
18date_modifiedDate the entry was last modifiedMRSAT.ATN=DATE_LAST_MODIFIED
19entrez_idEntrez gene IDMRSAT.ATN=ENTREZGENE_ID
20ensembl_gene_idEnsembl gene IDMRSAT.ATN=ENSEMBLGENE_ID
21vega_idVega gene IDMRSAT.ATN=VEGA_ID
22ucsc_idUCSC gene IDMRSAT.ATN=MAPPED_UCSC_ID
23enaInternational Nucleotide Sequence Database Collaboration accession number(s)MRSAT.ATN=ENA
24refseq_accessionRefSeq nucleotide accession(s)MRSAT.ATN=REFSEQ_ID
25ccds_idConsensus CDS IDMRSAT.ATN=CCDS_ID
26uniprot_idsUniProt protein accessionMRSAT.ATN=SWP
27pubmed_idPubmed and Europe Pubmed Cental PMID(s)MRSAT.ATN=PMID
28mgd_idMouse genome informatics database IDMRSAT.ATN=MGD_ID
29rgd_idRat genome database gene IDMRSAT.ATN=RGD_ID
30lsdbThe name of the Locus specific Mutation Database and URL for the gene separated by a | characterMRSAT.ATN=LOCUS_SPECIFIC_DB_XR
31cosmicSymbol used within the Catalogue of somatic mutations in cancer for the geneMRSAT.ATN=DB_XR_ID|COSMIC:
32omim_idOnline Mendelian Inheritance in Man (OMIM) IDMRSAT.ATN=OMIM_ID
33mirbasemiRBase IDMRSAT.ATN=DB_XR_ID|MiRBase:
34homeodbHomeobox Database IDMRSAT.ATN=DB_XR_ID|HomeoDB:
35snornabaseSnoRNABase IDMRSAT.ATN=DB_XR_ID|snoRNABase:
36bioparadigms_slcSymbol used to link to the SLC tables database at bioparadigms.org for the geneMRSAT.ATN=DB_XR_ID|BioParadigms:
37orphanetOrphanet IDMRSAT.ATN=Orphanet:
38pseudogene.orgPseudogene.org IDMRSAT.ATN=DB_XR_ID|Pseudogene.org:
39horde_idSymbol used within HORDE for the geneMRSAT.ATN=DB_XR_ID|HORDE_ID:
40meropsID used to link to the MEROPS peptidase databaseMRSAT.ATN=DB_XR_ID|MEROPS:
41imgtSymbol used within the international ImMunoGeneTics information systemMRSAT.ATN=DB_XR_ID|IMGT/GENE-DB:
42iupharThe objectID used to link to the IUPHAR/BPS Guide to PHAMACOLOGY database.MRSAT.ATN=DB_XR_ID|IUPHAR:
43kznf_gene_catalogID used to link to the Human KZNF Gene CatalogMRSAT.ATN=DB_XR_ID|KZNF Gene Catalog:
44mamit-trnadbID to link to the Mamit-tRNA databaseMRSAT.ATN=DB_XR_ID|Mamit-tRNAdb:
45cdSymbol used within the Human Cell Differentiation Molecule database for the geneMRSAT.ATN=DB_XR_ID|CD:
46lncrnadblncRNA Database IDMRSAT.ATN=DB_XR_ID|lncRNAdb:
47enzyme_idENZYME EC accession numberMRSAT.ATN=EZ
48intermediate_filament_dbID used to link to the Human Intermediate filament DatabaseMRSAT.ATN=DB_XR_ID|Intermediate Filament DB:
49rna_central_idsRNA Central IDMRSAT.ATN=RNA_CENTRAL_ID
50lncipediaComprehensive compendium of human long non-coding RNAsMRSAT.ATN=LNCIPEDIA
51gtrnadbDatabase that contains tRNA gene predictions made by tRNAscan-SE on complete or nearly complete genomesMRSAT.ATN=DB_XR_ID|GtRNAdb:
52agrAlliance of Genome Resources. HGNC will link to the Human Gene page at the AGR via HGNC ID if such a page exists.MRSAT.ATN=AGR
53mane_selectNCBI and Ensembl transcript IDs/acessions including the version number for one high-quality representative transcript per protein-coding gene that is well-supported by experimental data and represents the biology of the gene. The multiple IDs are delimited by |.MRSAT.ATN=MANE_SELECT
54genccHGNC ID used within the GenCC database as the unique identifier of their gene reports within the GenCC database.MRSAT.ATN=GENCC