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Unified Medical Language System® (UMLS®)

2011AB HUGO Source Information




Skip to: General Notes/Comments, Summary of Changes, Summary of Source-Provided Files Source-Provided File Details

General Notes/Comments:

The Human Genome Organisation (HUGO), established in 1989, is an international organization whose primary ethos is to promote and sustain collaboration in the field of human genetics.

Data is supplied in a single, tab-delimited, text file.

Summary of Changes

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(1) The 'Aliases' and 'Name Aliases' fields were renamed 'Synonyms' and 'Name Synonyms', respectively.

(2) Values in the 'Enzyme IDs' field no longer have the 'EC' prefix.

Summary of Source-Provided Files

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Documentation and Reference

  • www.genenames.org
  • www.hugo-international.org

File NameDescription
HUGO_2011_AllData_pl.txtComplete source data in a text file with tab delimited fields.

Source-Provided File Details

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Field NumberField NameDescriptionRepresentation
1HGNC IDA unique ID provided by the HGNCMRCONSO.CODE; MRCONSO.SCUI
2Approved SymbolOfficial gene symbolMRCONSO.STR; MRSAT.ATN=GENESYMBOL
3Approved NameOfficial gene nameMRCONSO.STR
4StatusIndicates gene classification (e.g., withdrawn, approved)Not processed
5Locus TypeSpecifies type of locus (e.g., pseudogene, protocadherin)MRSAT.ATN=LOCUS_TYPE
6Locus GroupLocus GroupMRSAT.ATN=LOCUS_GROUP
7Previous SymbolsSymbols previously approvedMRSAT.ATN=PREV_SYMBOL
8Previous NamesGene names previously approvedMRSAT.ATN=PREV_NAME
9SynonymsOther symbols used to refer to the geneMRCONSO.STR
10Name SynonymsOther names used to refer to the geneMRCONSO.STR
11ChromosomeIndicates the location of the gene on the chromosomeMRSAT.ATN=CHROMOSOME
12Date ApprovedDate gene symbol and name were approvedMRSAT.ATN=DATE_CREATED
13Date ModifiedDate entry was modifiedMRSAT.ATN=DATE_LAST_MODIFIED
14Date Symbol ChangedDate gene symbol was last changedMRSAT.ATN=DATE_SYMBOL_CHANGED
15Date Name ChangedDate the gene name was last changedMRSAT.ATN=DATE_NAME_CHANGED
16Accession NumbersAccession numbersMRSAT.ATN=ACCESSION_NO
17Enzyme IDsEnzyme Commission (EC) numberMRSAT.ATN=EZ
18Entrez Gene IDEntrez Gene IDMRSAT.ATN=ENTREZGENE_ID
19Ensembl Gene IDEnsembl Gene IDMRSAT.ATN=ENSEMBLGENE_ID
20Mouse Genome Database IDMouse Genome Database IDMRSAT.ATN=MGD_ID
21Specialist Database LinksContains HTML links to specialist databasesMRSAT.ATN=DB_XR
22Specialist Database IDsContains the ID within each specialist databaseMRSAT.ATN=DB_XR_ID
23Pubmed IDsIdentifier that links to published articlesMRSAT.ATN=PMID
24RefSeqIDsRefSeqIDsMRSAT.ATN=REFSEQ_ID
25Gene Family NameName of the family the gene has been assigned toMRSAT.ATN=GENE_FAM
26Record Typevalid values: Parent, StandardMRSAT.ATN=RECORD_TYPE
27Primary IDsvalid values: blank, hypenMRSAT.ATN=PRIMARY_ID
28Secondary IDsnumeric valueMRSAT.ATN=SECONDARY_ID
29CCDS IDsConsensus CDS (CCDS) project IDMRSAT.ATN=CCDS_ID
30VEGA IDsVEGA IDMRSAT.ATN=VEGA_ID
31Locus Specific DatabasesContains links to databases pertinent to the geneMRSAT.ATN=LOCUS_SPECIFIC_DB_XR
32GDB ID (mapped data)GDB ID (mapped data)MRSAT.ATN=MAPPED_GDB_ID
33Entrez Gene ID (mapped data)Entrez Gene ID (mapped data supplied by NCBI)MRSAT.ATN=MAPPED_ENTREZGENE_ID
34OMIM ID (mapped data)OMIM ID (mapped data supplied by NCBI)MRSAT.ATN=OMIM_NUMBER
35RefSeq (mapped data)RefSeq (mapped data supplied by NCBI)MRSAT.ATN=MAPPED_REFSEQ_ID
36UniProt ID (mapped data)UniProt ID (mapped data supplied by UniProt)MRSAT.ATN=SWP
37Ensembl Gene ID (mapped data)Ensembl Gene ID (mapped data supplied by Ensembl)MRSAT.ATN=MAPPED_ENSEMBLGENE_ID
38UCSC (mapped data)UCSC (mapped data supplied by UCSC)MRSAT.ATN=UCSC_ID
39Mouse Genome Database ID (mapped data)Mouse Genome Database ID (mapped data supplied by MGI)MRSAT.ATN=MAPPED_MGD_ID
40Rat Genome Database ID (mapped data)Rat Genome Database ID (mapped data supplied by RGD)MRSAT.ATN=MAPPED_RGD_ID

(1) The following fields can contain multiple values in a comma delimited list:

Accession Numbers
Enzyme ID
Gene Family Name
Name Synonyms
Previous Names
Previous Symbols
Pubmed ID
RefSeq IDs
Specialist Database ID
Specialist Database Links
Synonyms

(2) HUGO's mapped data is derived from external sources and is not subject to their checking and curation procedures.