Digital Brain Atlas Using the Visible Human Project Data

Mi Young Toh, Robert B. Falk, James S. Main
National Library of Medicine, National Institutes of Health, Bethesda, MD

An interactive digital brain was developed using the Visible Human Project's photographic images of cryosections of the brain and their corresponding axial magnetic resonance (MR) images and computed tomography (CT) images (Figure 1). There are three sets of MR scans (i.e. T1 weighted, T2 weighted and proton density weighted images) in the data set that were used in the atlas. In addition to the existing axial images of the cryosections, sagittal and coronal images were generated to provide multidimensional views of the anatomic structures in the brain.

The program currently runs on the Macintosh platform and has a graphical user interface that supports a user interaction with various 2D and 3D representations of the brain
(Figure 2). A simultaneous display of multiple images and motion sequences of the 3D brain provides an important link between 2D brain slices and volume rendered 3D anatomic structures.

In order to create the 3D rendered images, the brain was segmented by manual tracing, thresholding, and morphological algorithms. The segmented data was then rendered using volumetric rendering tools on a Silicon Graphics Workstation. The development methods and techniques of this atlas demonstrate the use of a high -end computer to develop complex images and the ability to export the output to other platforms (e.g. Macintosh). This atlas can be used as a model for the development of other Computer Assisted Instruction (CAI) applications using the Visible Human data set.



Reference

Toh M, Falk RB, Main JS, Interactive Brain Atlas Using the Visible Human Project Data: Development Methods and Techniques, Radiographics, 1996; 16:1201-1206

Spitzer V, Ackerman MJ, Schersinger AL, Whitlock D, The Visible Human Male: a technical report. J AM Med Inform Assoc 1996; 3:118-130.


Motion Sequences (QuickTime Animations)
1. 3D whole brain (4,148K)
2. Sagittal view (621K)
3. Coronal view (706K)
4. Top view (1,233K)
5. Bottom view (1,301K)