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Grants and Funding: Extramural Programs (EP)

American Recovery and Reinvestment Act Awards

The list below consists of grant awards made by NLM using funds from the American Recovery & Reinvestment Act (ARRA). Multi-year projects will appear each year in which funds are awarded. New investigators are defined as those who have not previously received a significant NIH independent research grant; Early Stage investigators are those new investigators who are in the first 10 years of their research career.

Fiscal Years

2010

Challenge Grant (RC1)

Barrett, Jeffrey Scott
Decision Support System to Guide Pediatric Pharmacotherapy
5RC1LM010367-02
Children’s Hospital of Philadelphia

Bates, David W
Refining IT Support for Genetics in Medicine
5RC1LM010526-02
Brigham and Women's Hospital

Cobb, Loren
Improved Tracking for Emerging Diseases from Climate Change
5RC1LM010641-02
University of Colorado Denver

Gajic, Ognjen
In Silico Model for Acute Lung Injury Prediction and Clinical Trial Design
1RC1LM010468-01
Mayo Clinic

Goldsworthy, Richard Charles
Social virtual reality and diabetes management: Extending the clinical encounter
1RC1LM010484-01
Academic Edge, Inc.

Grundmeier, Robert W
Comprehensive Clinical Decision Support for the Primary Care of Premature Infants
1RC1LM010471-01
Childrens Hospital of Philadelphia

Haug, Peter John
Building Complex Disease Models using Ontologies and Data Repositories
1RC1LM010482-01
IHC Health Services, Inc.

Holmes, John H
Mining Internet Conversation for Evidence of Herbal Association
5RC1LM010342-02
University of Pennsylvania

Kempe, Allison
Population versus Practice-Based Interventions to Increase Immunization Rates
5RC1LM010513-02
University of Colorado Denver

Kulldorff, Martin
Data Mining Electronic Health Records for Drug Adverse Events
5RC1LM010371-02
Harvard Pilgrim Health Care, Inc.

Louwerse, Max
The Importance of Language Characteristics in Documenting Clinical Encounters
5RC1LM010442-02
University of Memphis

Mandl, Kenneth D
Presenting Genome Information in Patient Electronic Records: The Informed Cohort
5RC1LM010470-02
Children's Hospital Boston

Miller, Marlene Rosemary
Improving Childhood Immunization Compliance Using Electronic Health Records
5RC1LM010512-02
Johns Hopkins University

Richesson, Rachel L
Library of Standardized Patient Registry Questions forRare Diseases
5RC1LM010455-02
University of South Florida

Roderer, Nancy K
Impact of Information Prescriptions on Medication Adherence in ED Patients
1RC1LM010424-01
Johns Hopkins University

Ruggiero, Laurie
Diabetes Second Life: A virtual world to support an underserved population
1RC1LM010656-01
University of Illinois at Chicago

Safaii-Fabiano, Seanne Jo
Effectiveness of Second Life in Promoting Diabetes Management
1RC1LM010651-01
University of Idaho

Savova, Guergana
Multi-source clinical Question Answering system
7RC1LM010608-02
Children's Hospital Boston

Schneeweiss, Sebastian G
'Stopping Rules' for Drug Safety Monitoring Using Healthcare Databases
5RC1LM010351-02
Brigham and Women's Hospital

Shugart, Erika C
Ages and Stages: Brain, Learning and Aging
1RC1LM010491-01
National Academy of Sciences

Tucker, Don M
Emergency Neurophysiological Assessment Bedside Logic Engine
1RC1LM010388-01
Electrical Geodesics, Inc.

Turchin, Alexander
Natural Language Processing to Study Epidemiology of Statin Side Effects
5RC1LM010460-02
Brigham and Women's Hospital

Waldinger, Richard J
Intelligent Question Answering in the HIV Domain (SRI Proposal ECU 09-630)
5RC1LM010583-02
Sri International

Wetzel, Randall C
Advanced Computational Framework for Decision Support in Critically Ill Children
5RC1LM010639-02
Children's Hospital Los Angeles

Wheeler, Arthur P
A Model-integrated, Guideline-driven Process Management System for Sepsis
5RC1LM010310-02
Vanderbilt University

Wiecha, John Moore
Virtual World Health Behavior Counseling for Patients with Diabetes
1RC1LM010412-01
Boston Medical Center

Williams, Geoffrey C
Using Virtual Environments to Improve Health and Compliance in Diabetes
1RC1LM010410-01
University of Rochester

Grand Opportunities Grant

Moskowitz, Jay
An Open Source Research Permissions Framework for South Carolina
5RC2LM010796-02
University of South Carolina at Columbia

Narus, Scott P
Development of a Statewide Master Person Index
5RC2LM010798-02
University of Utah

Terdiman, Joseph
The Kaiser Permanente National Research Database
5RC2LM010797-02
Kaiser Foundation Research Institute

Research Infrastructure Grants (RC2, RC4)

Cardozo, Timothy J
A Chemical Biology Network for Personalized Medicine
1RC2LM010994-01
New York University School of Medicine

Saultz, John W
CREATE Community Capacity
1RC4LM010852-01
Oregon Health and Science University

Small Business Grants (RC3, R43)

Cham, Michael
Automated Creation of Clinical Progress Notes with Machine Learning
1R43LM010775-01
Blenderhouse

Chen, Lingji
Social Network-Enabled Flu Trends (SNEFT) Integrating Online Social Network Data
1R43LM010766-01
Scientific Systems Company, Inc.

Ferson, Scott D
Compensating for Uncertainty Biases in Health Risk Judgments
1RC3LM010794-01
Applied Biomathematics, Inc.

Hubbard, Roger Allan
OpenLIS: The Development of a Clinical Laboratory Information System Using the Op
1R43LM010755-01
Molecular Pathology Laboratory Network

Riskin, Daniel Jay
Voice Based, Workflow Enhancing, Primary Care Medical Data Input System
1R43LM010750-01
VMT, Inc.

Other ARRA Research Grants (R01, R03, R21)

Alexov, Emil Georgiev
The Effect of Single Nucleotide Polymorphisms on Protein Structure and Interactio
3R03LM009748-01A2S1
Clemson University

Ash, Joan S
Clinical Decision Support in Community Hospitals: Barriers & Facilitators
5R01LM006942-08
Oregon Health And Science University

Blalock, Travis N
Wireless Real-Time Monitoring of Research Animals
5R21LM009763-02
University of Virginia Charlottesville

Bry, Lynn
Crimson - i2b2 integration for high-throughput, scalable sample collection
5R01LM010100-02
Brigham and Women's Hospital

Carroll, Aaron E
Computer Decision Aid for ADHD Management (CDAAM)
5R01LM010031-02
Indiana Univ-Purdue Univ at Indianapolis

Clermont, Gilles
Quantitative, Model-based Medical Decision support by Bayesian Inference
5R21LM009936-02
University of Pittsburgh at Pittsburgh

Cooper, Gregory F
Predicting Patient Outcomes from Clinical and Genome-Wide Data
5R01LM010020-02
University of Pittsburgh at Pittsburgh

Crangle, Colleen Elizabeth
Beyond information extraction: Identifying Gene Ontology concepts in text
5R03LM009752-02
Converspeech, LLC

Crowley, Rebecca S
Computational Methods for Personalized and Adaptive Cognitive Training
5R01LM007891-06
University of Pittsburgh at Pittsburgh

Das, Amarendra K
Open-Source Toolkit for Knowledge-Based Querying of Time-Oriented Data
5R01LM009607-02
Stanford University

Elhadad, Noemie
An NLP Approach to Generating Patient Record Summaries
5R01LM010027-02
Columbia University Health Sciences

Graur, Dan
Error Correction in Multiple Sequence Alignments
5R01LM010009-02
University of Houston

Griswold, William G
WIISARD SAGE: Self-Scaling Systems for Mass Casualty Management
5R01LM009522-02
University of California San Diego

Jagadish, HV
Literature and Data Driven Hypothesis Generation for High Throughput Experiments
5R01LM010138-02
University of Michigan at Ann Arbor

Kohane, Isaac S
Preventing the Incidentalome
5R01LM010125-02
Harvard University (Medical School)

Li, Jing
Multi-point and Multi-locus Analysis of Genomic Association Data
5R01LM008991-05
Case Western Reserve University

Liu, Hongfang
Onto-BioThesaurus: ontological representation of gene/protein names for biomedica
5R01LM009959-02
Georgetown University

Logan, Judith R
Exploiting the User Interface for Data Integration in Effectiveness Research
5R21LM009550-02
Oregon Health and Science University

Li, Jing
Multi-point and Multi-locus Analysis of Genomic Association Data
5R01LM008991-05
Case Western Reserve University

Logan, Judith R
Exploiting the User Interface for Data Integration in Effectiveness Research
5R21LM009550-02
Oregon Health and Science University

Lu, Guoqing
A Computational Genotyping System for Improved Influenza Surveillance
5R01LM009985-02
University of Nebraska Omaha

Ma, Shuangge
Effective Clustering Penalized Methods for Genomic Biomarker Selection
5R03LM009754-02
Yale University

Quackenbush, John
Integrated Approaches to Deriving Predictive Networks from Public Data Sources
5R01LM010129-02
Dana-Farber Cancer Institute

Rabadan, Raul
Integrated Discovery and Hypothesis Testing of New Associations in Rare Diseases
5R01LM010140-02
Columbia University Health Sciences

Ritchie, Marylyn D
Analysis Tool for Heritable and Environmental Network Associations
5R01LM010040-02
Vanderbilt University

Rodin, Andrei
Multivariate Analysis of Candidate Blood Pressure Response Genes in Hypertensives
5R03LM009738-02
University of Texas Hlth Sci Ctr Houston

Rosenberg, Michael S
Sequence Alignment Fidelity in Genomics and Bioinformatics
5R01LM009505-02
Arizona State University-Tempe Campus

Rzhetsky, Andrey
Large-scale Discovery of Scientific Hypotheses; Computation over Expert Opinions
5R01LM010132-02
University of Chicago

Szallasi, Zoltan
Increasing the Reliability of Clinical Microarray Data Analysis by Systematic Bia
5R03LM009979-02
Children's Hospital Boston

Taira, Ricky K
Data Structuring and Visualization System for Neuro-oncology
5R01LM009961-02
University of California Los Angeles

Tonellato, Peter J
Method for Prediction of Efficacy of Genetic-Based Prediction Models of Personali
5R01LM010130-02
Harvard University (Medical School)

Verspoor, Karin Maria
Automated Literature Mining for Validation of High-Throughput Function Prediction
5R01LM010120-02
University of Colorado Denver

Veshtort, Mikhail
Novel Method to Identify Competing Protein-Protein Binders
5R03LM009739-02
Columbia University Health Sciences

Wang, Yu-Ping
A New Paradigm for Integrated Analysis of Multiscale Genomic Imaging Datasets
7R21LM010042-02
Tulane University of Louisiana

Zhu, Dongxiao
A New Informatics Paradigm for Reconstructing Signaling Pathways in Human Disease
5R21LM010137-02
Louisiana State Univ-Univ of New Orleans

Administrative Supplements

Alexov, Emil Georgiev
The Effect of Single Nucleotide Polymorphisms on Protein Structure and Interaction
3R03LM009748-01A2S1
Clemson University

Baldi, Pierre
Biomedical Informatics Training Program
3T15LM007443-08S1
University of California Irvine

Crowley, Rebecca S
Computational Methods for Personalized and Adaptive Cognitive Training
3R01LM007891-05S1
University of Pittsburgh at Pittsburgh

Ganz, Aura
DIORAMA: Dynamic Information Collection and Resource Tracking Architecture
3R21LM008942-02S2
University of Massachusetts Amherst

Ilyin, Valentin A
Accurate protein structural comparisons by TOPOFIT
3R01LM009519-03S1
Boston College

Kohane, Isaac S
GPing: Informatics for Personal Control of Genomic Data
3R01LM009375-03S1
Children's Hospital Boston

Ohno-Machado, Lucila
Assessing Quality of Individual Predictions in Medical Decision Support Systems
3R01LM009520-04S2
University of California San Diego

Prihod, Kevin F
Medical Marvels Interactive Translational Research Experience (MITRE)
3R03LM010053-02S1
Detroit Science Center

Rabadan, Raul
Integrated Discovery and Hypothesis Testing of New Associations in Rare Diseases
3R01LM010140-02S1
Columbia University Health Sciences

Scotch, Matthew
Informatics for Zoonotic Disease Surveillance: Combining Animal and Human Data
3K99LM009825-02S1
Yale University

Tonellato, Peter J
Method for Prediction of Efficacy of Genetic-Based Prediction Models of Personali
3R01LM010130-02S1
Harvard University (Medical School)

Weng, Chunhua
Bridging the Semantic Gap between Research Eligibility Criteria and Clinical Data
3R01LM009886-02S1
Columbia University Health Sciences

Zeng, Qing
Vocabulary Support for Consumer Health Informatics
3R01LM007222-07S1
University of Utah

Zhao, Zhongming
Investigating CpG Islands in Mammalian Genomes
3R03LM009598-02S1
Vanderbilt University Med Ctr

Summer Research Experience (SRE) Supplements

Altman, Russ Biagio
Annotating Functional Sites in 3D Biological Structures
3R01LM005652-14S2
Stanford University

Archer, Kellie J
Recursive Partitioning and Ensemble Methods for Classifying an Ordinal Response
3R03LM009347-02S2
Virginia Commonwealth University

Fidelis, Krzysztof A
Center for Critical Assessment of Structure Prediction
3P41LM007085-11S1
University of California Davis

Perl, Yehoshua
Taxonomies Supporting Orientation, Navigation and Auditing of Terminologies
3R01LM008912-03S2
New Jersey Institute of Technology

Tonellato, Peter J
Method for Prediction of Efficacy of Genetic-Based Prediction Models of Personali
3R01LM010130-01S1
Harvard University (Medical School)

Zhu, Dongxiao
A new informatics paradigm for reconstructing signaling pathways in human disease
3R21LM010137-01S1
Louisiana State Univ-Univ of New Orleans

top

2009

Challenge Grants

Barrett, Jeffrey Scott
Decision Support System to Guide Pediatric Pharmacotherapy
1RC1LM010367-01
Childrens Hospital of Philadelphia

Bates, David W
Refining IT Support for Genetics in Medicine
1RC1LM010526-01
Brigham and Women's Hospital

Cobb, Loren
Improved Tracking for Emerging Diseases from Climate Change
1RC1LM010641-01
University of Colorado Denver

Holmes, John H
Mining Internet Conversation for Evidence of Herbal Association
1RC1LM010342-01
University of Pennsylvania

Kempe, Allison
Population versus Practice-Based Interventions to Increase Immunization Rates
1RC1LM010513-01
University of Colorado Denver

Kulldorff, Martin
Data Mining Electronic Health Records for Drug Adverse Events
1RC1LM010371-01
Harvard Pilgrim Health Care, Inc.

Louwerse, Max
The Importance of Language Characteristics in Documenting Clinical Encounters
1RC1LM010442-01
University of Memphis

Mandl, Kenneth D
Presenting Genome Information in Patient Electronic Records: The Informed Cohort
1RC1LM010470-01
Children's Hospital Boston

Miller, Marlene Rosemary
Improving Childhood Immunization Compliance Using Electronic Health Records
1RC1LM010512-01
Johns Hopkins University

Richesson, Rachel L
Library of Standardized Patient Registry Questions for Rare Diseases
1RC1LM010455-01
University of South Florida

Savova, Guergana
Multi-source Clinical Question Answering System
1RC1LM010608-01
Mayo Clinic

Schneeweiss, Sebastian G
'Stopping Rules' for Drug Safety Monitoring Using Healthcare Databases
1RC1LM010351-01
Brigham And Women's Hospital

Turchin, Alexander
Natural Language Processing to Study Epidemiology of Statin Side Effects
1RC1LM010460-01
Brigham and Women's Hospital

Waldinger, Richard J
Intelligent Question Answering in the HIV Domain (SRI Proposal ECU 09-630)
1RC1LM010583-01
SRI International

Wetzel, Randall C
Advanced Computational Framework for Decision Support in Critically Ill Children
1RC1LM010639-01
Children's Hospital Los Angeles

Wheeler, Arthur P
A Model-integrated, Guideline-driven Process Management System for Sepsis
1RC1LM010310-01
Vanderbilt University

Grand Opportunities Grants

Moskowitz, Jay
An Open Source Research Permissions Framework for South Carolina
1RC2LM010796-01
University of South Carolina at Columbia

Narus, Scott P
Development of a Statewide Master Person Index
1RC2LM010798-01
University of Utah

Terdiman, Joseph
The Kaiser Permanente National Research Database
1RC2LM010797-01
Kaiser Foundation Research Institute

Other ARRA Research Grants (R01, R02, R15, R21, RC4)

Alexov, Emil Georgiev
The Effect of Single Nucleotide Polymorphisms on Protein Structure and Interactions: Application to Spearmine Synthase Gene
1R03LM009748-01A2
Clemson University

Ash, Joan S
Clinical Decision Support in Community Hospitals: Barriers & Facilitators
2R01LM006942-07A2
Oregon Health and Science University

Blalock, Travis N
Wireless Real-Time Monitoring of Research Animals
1R21LM009763-01
University of Virginia Charlottesville

Bry, Lynn
Crimson - i2b2 Integration For High-Throughput, Scalable Sample Collection
1R01LM010100-01
Brigham And Women's Hospital

Carroll, Aaron E
Computer Decision Aid for ADHD Management (CDAAM)
1R01LM010031-01
Indiana Univ-Purdue Univ at Indianapolis

Clermont, Gilles
Quantitative, Model-based Medical Decision support by Bayesian Inference
1R21LM009936-01A1
University of Pittsburgh at Pittsburgh

Cooper, Gregory F
Predicting Patient Outcomes from Clinical and Genome-Wide Data
1R01LM010020-01
University of Pittsburgh at Pittsburgh

Crangle, Colleen Elizabeth
Beyond Information Extraction: Identifying Gene Ontology Concepts in Text
1R03LM009752-01
Converspeech, LLC

Crowley, Rebecca S
Computational Methods for Personalized and Adaptive Cognitive Training
2R01LM007891-05
University of Pittsburgh at Pittsburgh

Das, Amarendra K
Open-Source Toolkit for Knowledge-Based Querying of Time-Oriented Data
1R01LM009607-01A2
Stanford University

Elhadad, Noemie
An NLP Approach to Generating Patient Record Summaries
1R01LM010027-01
Columbia University Health Sciences

Graur, Dan
Error Correction in Multiple Sequence Alignments
1R01LM010009-01
University of Houston

Griswold, William G
WIISARD SAGE: Self-Scaling Systems for Mass Casualty Management
1R01LM009522-01A1
University of California San Diego

Gurcan, Metin Nafi
OAMiner: Integrative Knowledge Anchored Hypothesis Discovery
1R01LM010119-01
Ohio State University

Jagadish, HV
Literature and Data Driven Hypothesis Generation for  High Through put Experiments
1R01LM010138-01
University of Michigan at Ann Arbor

Kattan, Michael W
Refinement and Enhancement of a Web-based Risk Calculator Deployment System
1 RC4 LM010959-01
Cleveland Clinic Lerner Col/Med-CWRU

Kohane, Isaac S
Preventing the Incidentalome
1R01LM010125-01
Harvard University (Medical School)

Li, Jing
Multi-Point and Multi-Locus Analysis of Genomic Association Data
2R01LM008991-04
Case Western Reserve University

Liu, Hongfang
Onto-BioThesaurus: Ontological Representation of Gene/Protein Names for Biomedical Literature Mining
1R01LM009959-01A1
Georgetown University

Lu, Guoqing
A Computational Genotyping System for  Improved Influenza Surveillance
1R01LM009985-01A1
University of Nebraska Omaha

Ma, Shuangge
Effective Clustering Penalized Methods for Genomic Biomarker Selection
1R03LM009754-01A1
Yale University

Mikler, Armin Robert
A Computational Framework for Assessing the Feasibility of Bio-emergency Response
1 R15 LM010804-01
University of North Texas

Quackenbush, John
Integrated Approaches to Deriving Predictive Networks from Public Data Sources
1R01LM010129-01
Dana-Farber Cancer Institute

Rabadan, Raul
Integrated Discovery and Hypothesis Testing of New Associations in Rare Diseases
1R01LM010140-01
Columbia University Health Sciences

Ritchie, Marylyn D
Analysis Tool for Heritable and Environmental Network Associations
1R01LM010040-01
Vanderbilt University

Rodin, Andrei
Multivariate Analysis of Candidate Blood Pressure Response Genes in Hypertensives
1R03LM009738-01A1
University of Texas Hlth Sci Ctr Houston

Rosenberg, Michael S
Sequence Alignment Fidelity in Genomics and Bioinformatics
1R01LM009505-01A1
Arizona State University-Tempe Campus

Rost, Burkhard
Novel Method to Identify Competing Protein-Protein Binders
1R03LM009739-01
Columbia University Health Sciences

Shannon, William D
New Observational Data Analysis Methods for Comparative Effectiveness Research
1RC4LM010958-01
Washington University

Szallasi, Zoltan
Increasing the Reliability of Clinical Microarray Data Analysis by Systematic Bias Correction
1R03LM009979-01
Children's Hospital Boston

Taira, Ricky K
Data Structuring and Visualization System for Neuro-oncology
1R01LM009961-01
University of California Los Angeles

Tonellato, Peter J
Method for Prediction of Efficacy of Genetic-Based Prediction Models of Personalized Medicine with Clinical Avatars
1R01LM010130-01
Harvard University (Medical School)

Verspoor, Karin Maria
Automated Literature Mining for Validation of High-Throughput Function Prediction
1R01LM010120-01
University of Colorado Denver

Wang, Yu-Ping
A New Paradigm for Integrated Analysis of Multiscale Genomic Imaging Datasets
1R21LM010042-01
University of Missouri Kansas City

Administrative Supplements

Altman, Russ Biagio
Annotating Functional Sites in 3D Biological Structures
3R01LM005652-14S1
Stanford University

Altman, Russ Biagio
Graduate Training in Biomedical Informatics
3T15LM007033-26S1
Stanford University

Bass, Ellen J
Systems Engineering Focus on Clinical Informatics
3T15LM009462-03S1
University of Virginia Charlottesville

Bennett, Kristin P
Discovering Hidden Groups across Tuberculosis Patient and Pathogen Genotype Data
3R01LM009731-02S1
Rensselaer Polytechnic Institute

Bennett, Kristin P
Discovering Hidden Groups across Tuberculosis Patient and Pathogen Genotype Data
3R01LM009731-02S1
Rensselaer Polytechnic Institute

Benos, Panagiotis V
Modeling in vivo Protein-DNA Interactions from High-Throughput Data MP1/1
3R01LM009657-03S1
University of Pittsburgh at Pittsburgh

Bui, Alex
Medical Imaging Informatics Training Program
3T15LM007356-08S1
University of California Los Angeles

Bui, Alex
Medical Imaging Informatics Training Program
3T15LM007356-08S2
University of California Los Angeles

Caldwell, Charles W
MU Biomedical Informatics Research Training Program
3T15LM007089-18S1
University of Missouri-Columbia

Chapman, Wendy W
NLP Foundational Studies & Ontologies for Syndromic Surveillance from ED Reports
3R01LM009427-04S1
University of California San Diego

Crowley, Rebecca S
Pittsburgh Biomedical Informatics Training Program
3T15LM007059-23S1
University of Pittsburgh at Pittsburgh

Embi, Peter J
Evaluating EHR-based, Point-of-Care Trial Recruitment across Clinical Settings
3R01LM009533-01A1S1
Ohio State University

Eppig, Janan T
International Mouse Strain Resource (IMSR)
3G08LM009693-02S1
Jackson Laboratory

Fetters, Michael Derwin
Medical Marvels Interactive Translational Research Experience (MITRE)
3R03LM010052-01S1
University of Michigan at Ann Arbor

Fidelis, Krzysztof A
Center for Critical Assessment of Structure Prediction
3P41LM007085-10S2
University of California Davis

Foran, David J
Image Mining for Comparative Analysis of Expression Patterns in Tissue Microarray
3R01LM009239-03S2
Univ of Med/Dent NJ-R W Johnson Med Sch

Frantsve-Hawley, Julie C
Web-based Resource on Evidence-based Dentistry
3G08LM008956-03S1
American Dental Association Foundation

Friedman, Carol
Pharmacovigilence using Natural Language Processing, Statistics, and the EHR
3R01LM010016-01S1
Columbia University Health Sciences

Gadd, Cynthia S
Vanderbilt Biomedical Informatics Training Program
3T15LM007450-08S1
Vanderbilt University

Gandhi, Rajesh T
eMicrobes: A Digital Library for Learning Infectious Diseases
3G08LM008830-03S1
Massachusetts General Hospital

Garner, Harold R
Duplicate Article/Plagiarism Discovery
3R01LM009758-02S1
University of Texas SW Med Ctr/Dallas

Gorry, Tony
NLM Training Program in Biomedical Informatics
3T15LM007093-18S1
Rice University

Hazlehurst, Brian L
Investigating the Generalizability of Natural Language Processing of EMR Data
3R21LM009728-01A1S1
Kaiser Foundation Research Institute

Hersh, William R
Biomedical Informatics Research Training at Oregon Health & Science University
3T15LM007088-18S1
Oregon Health and Science University

Hunter, Lawrence E
Computational Bioscience Program Training Grant
3T15LM009451-03S1
University of Colorado Denver

Hurdle, John F
POET: Consolidated, Comprehensive Clinical Text Preprocessing
3R21LM009967-01S1
University of Utah

Jurka, Jerzy Wladyslaw
Repbase Update-a Database of Repetitive Sequences
3P41LM006252-12S1
Genetic Information Research Institute

Kim, Seungchan
Integrating Genomic Data and Biological Knowledge to Learn Context-Specific Gene
3R21LM009706-02S2
Arizona State University-Tempe Campus

Lehmann, Harold P
Health Sciences Informatics Research Training Fellowship Program
3T15LM007452-07S1
Johns Hopkins University

Liddy, Elizabeth D
Improving Public Health Grey Literature Access for the Public Health Workforce
3G08LM008983-03S1
Syracuse University

Lobach, David F
Software Leveraging a Standards-Based Web Service Framework for Decision Support
3R42LM009051-03S1
Religent, Inc.

Lok, Benjamin
Immersive Virtual Patients with Abnormal Clinical Conditions for Medical Student
3R03LM009646-02S1
University of Florida

Lu, Xinghua
Automatic Literature-based Protein Annotation
3R01LM009153-03S1
Medical University of South Carolina

Mandl, Kenneth D
Evolving Clinical Information Libraries: Contextualizing Evidence Based Medicine
3G08LM009778-01A1S1
Harvard University (Medical School)

Mandl, Kenneth D
Disease Surveillance in Real Time: Geotemporal Methods
3R01LM007677-07S1
Children's Hospital Boston

Markley, John L
Biological Magnetic Resonance Databank: Metabolomics/Small Molecule Activities
3P41LM005799-14S1
University of Wisconsin Madison

Mendonca, Eneida A
Answering Information Needs in Workflow
3R01LM008799-03S1
University of Chicago

Miller, Perry L
Biomedical Informatics Research Training at Yale
3T15LM007056-23S1
Yale University

Mitchell, Joyce A
University of Utah Biomedical Informatics Training
3T15LM007124-13S1
University of Utah

Moore, Jason H
Machine Learning Prediction of Cancer Susceptibility
3R01LM009012-03S1
Dartmouth College

Moriyama, Etsuko
Efficient and Sensitive Mining System for G-Protein Coupled Receptors
3R01LM009219-02S1
University of Nebraska Lincoln

Norlin, Ernest Charles
Utah Medical Home Web Site Project
3G08LM007680-03S1
University of Utah

Ochs, Michael F
An Open-Source Algorithm Isolating Overlapping Signatures in Microarray Data
3R21LM009382-01A2S1
Johns Hopkins University

Pakhomov, Serguei VS
Sematic Relatedness for Active Medication Safety and Outcomes Surveillance
3R01LM009623-01A2S1
University of Minnesota Twin Cities

Pani, John R
Histological Reasoning: Visual Cognition in Microanatomy
3R01LM008323-04S1
University of Louisville

Perl, Yehoshua
Partitioning to Support Auditing and Extending the UMLS
3R01LM008445-03S1
New Jersey Institute of Technology

Perl, Yehoshua
Taxonomies Supporting Orientation, Navigation and Auditing of Terminologies
3R01LM008912-03S1
New Jersey Institute of Technology

Pope, Charlene Ann
Carolinas Conversations: A Multiethnic Digital Corpus of Speech for Older Persons
3G08LM009624-02S1
Medical University of South Carolina

Pratt, Wanda
Managing Health Information in Your Life
3R01LM009143-03S1
University of Washington

Roberts, Richard J
REBASE-The Restriction Enzyme Database
3P41LM005800-14S1
New England Biolabs, Inc.

Salzberg, Steven L
Computational Gene Modeling and Genome Sequence Assembly
3R01LM006845-10S1
University of Maryland College Pk Campus

Sasner, Michael
Enhancing the JaxMice Database Resource
3G08LM009233-02S1
Jackson Laboratory

Wall, Dennis Paul
Building a Framework for Exploration of Orthologs and Evolutionary Distances
3R03LM009261-02S1
Harvard University (Medical School)

Wong, Stephen TC
AFINITI - An Augmented System for Neuroimaging Followup
3G08LM008937-02S1
Methodist Hospital Research Institute

Xu, Xie George
4D Visible Human Modeling for Radiation Dosimetry
3R01LM009362-03S1
Rensselaer Polytechnic Institute

Yu, Hong
HERMES - Help Physicians to Extract and aRticulate Multimedia Information from literature to answer their ad-hoc medical quEstionS
3R01LM009836-02S1
University of Wisconsin Milwaukee

Zhang, Zhengdong D
Gene Regulation in Metastasis and New Methods to Analyze its Microarray Profiles
3K99LM009770-02S1
Yale University

Zhu, Yuerong
Development of a Highly Automated Microarray Data Analysis System that Allows
3R43LM009913-01A1S1
Bioinforx, Inc.

Summer Research Experience (SRE) Supplements

Bennett, Kristin P
Discovering Hidden Groups across Tuberculosis Patient and Pathogen Genotype Data
3R01LM009731-02S1
Rensselaer Polytechnic Institute

Brem, Harold
Diabetic Foot and Pressure Ulcer Databank
3R01LM008443-04S2
New York University School of Medicine

Gadd, Cynthia S
Vanderbilt Biomedical Informatics Training Program
3T15LM007450-08S2
Vanderbilt University

Garner, Harold R
Duplicate Article/Plagiarism Discovery
3R01LM009758-02S1
University of Texas SW Med Ctr/Dallas

Hersh, William R
Biomedical Informatics Research Training at Oregon Health & Science University
3T15LM007088-17S1
Oregon Health and Science University

Lu, Xinghua
Automatic Literature-based Protein Annotation
3R01LM009153-02S1
Medical University of South Carolina

Moore, Jason H
Machine Learning Prediction of Cancer Susceptibility
3R01LM009012-03S2
Dartmouth College

Perl, Yehoshua
Partitioning to Support Auditing and Extending the UMLS
3R01LM008445-03S1
New Jersey Institute of Technology

Waddell, Peter J
Comparative Bioinformatics and TP53 Expression
3R01LM008626-05S1
Purdue University West Lafayette

Competitive Revision Supplements

Archer, Kellie J
Recursive Partitioning and Ensemble Methods for Classifying an Ordinal Response
3R03LM009347-02S1
Virginia Commonwealth University

Fidelis, Krzysztof A
Platform for Physics-Based Methods in CASP (Comp. Rev. to LM007085)
3P41LM007085-10S1
University of California Davis

Friedman, Caro
Pharmacovigilence using Natural Language Processing, Statistics, and the EHR
3R01LM010016-01S2
Columbia University Health Sciences

Markley, John L
Biological Magnetic Resonance Databank: Metabolomics/Small Molecule Activities
3P41LM005799-14S1
University of Wisconsin Madison

Mooney, Sean David
Informatic Profiling of Clinically Relevant Mutation
3R01LM009722-04S1
Buck Institute for Research on Aging

Ohno-Machado, Lucila
Assessing Quality of Individual Predictions in Medical Decision Support Systems
3R01LM009520-04S1
University of California San Diego

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