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FMA (Foundational Model of Anatomy) - Source Representation


This page lists UMLS Metathesaurus data elements and traces them back to the specific source data that populates them.


Summary of Changes

Deprecated Attributes (ATN):
  • NEUROQUANT
  • HAS_DIRECT_SHAPE_TYPE

Source Provided Files:

fma.owl

Source-Provided Files: Details

AnnotationProperty Representation STYPE
abbreviation MRCONSO.RRF
TTY = "AB"
AB atoms are connected to their PT atom with REL = SY, RELA = expanded_form_of/has_expanded_form
AAL MRSAT.AAL_TERM (appended to annotated Target identifier SCUI
anatomical_coordinate MRSAT.ANATOMICAL_COORDINATE RUI
authority MRSAT.AUTHORITY AUI
cell_appendage_type MRSAT.CELL_APPENDAGE_TYPE SCUI
contributing_author MRSAT.CONTRIBUTING_AUTHOR SCUI
has_direct_number_of_pairs_per_nucleus MRSAT.CHROMOSOME_PAIRS_PER_NUCLEUS SCUI
CMA_label MRSAT.CMA_LABEL SCUI
comment MRSAT.COMMENT AUI
EuProstate16 MRSAT.EUPROSTATE16 SCUI
EuProstate27 MRSAT.EUPROSTATE27 SCUI
modification MRSAT.DATE_LAST_MODIFIED AUI
days_post_fertilization MRSAT.DAYS_POST_FERTILIZATION SCUI
dimension MRSAT.DIMENSION SCUI
Eponym MRSAT.EPONYM AUI
DK__Freesurfer_value MRSAT.FREESURFER_TERM (appended to annotatedTarget identifier) SCUI
gestation_age_weeks MRSAT.GESTATION_AGE_WEEKS RUI
has_boundary MRSAT.HAS_BOUNDARY SCUI
has_dimension MRSAT.HAS_DIMENSION SCUI
has_direct_cell_layer MRSAT.HAS_DIRECT_CELL_LAYER SCUI
has_direct_ploidy MRSAT.HAS_DIRECT_PLOIDY SCUI
has_inherent_3D_shape MRSAT.HAS_INHERENT_3D_SHAPE SCUI
has_mass MRSAT.HAS_MASS SCUI
JHU_DTI-81 MRSAT.JHU_DTI-81 SCUI
JHU_White-Matter_Tractography_Atlas MRSAT.JHU_WHITE_MATTER_TRACTOGRAPHY_ATLAS SCUI
language MRSAT.LANGUAGE AUI (included only if language = "Latin")
laterality MRSAT.LATERALITY RUI
Neurolex MRSAT.NEUROLEX_ID SCUI
outdated_meaning MRSAT.OUTDATED_MEANING AUI
partition MRSAT.PARTITION RUI
part_type MRSAT.PART_TYPE RUI
physical_state MRSAT.PHYSICAL_STATE SCUI
PIRADSv2 MRSAT.PIRADSV2 SCUI
polarity MRSAT.POLARITY SCUI
preferred_name MRCONSO.TTY = PT, OP Children of concept "Deprecated Term" are assigned obsolete TTYs.
RadLex_ID MRSAT.RADLEX_ID SCUI
species MRSAT.SPECIES SCUI
slot_synonym SLOT_SYNONYM SCUI
state_of_determination MRSAT.STATE_OF_DETERMINATION SCUI
synonym MRCONSO.TTY = SY, IS Children of concept "Deprecated Term" are assigned obsolete TTYs.
Talairach (appended to annotationTarget identifier) MRSAT.TALAIRACH_TERM SCUI
TA_ID MRSAT.TA_ID AUI
term_status MRSAT.TERM_STATUS AUI
concatenate language with string, e.g. "French: Veines tympaniques" MRSAT.TRANSLATION SCUI
view MRSAT.VIEW RUI

Definitions (MRDEF):

Definitions are created from data in the "definition" property.


Relationships (MRREL):

Origin (ObjectProperty)
If no inverse is listed below, the inverse was not indicated in the original owl file property definition
Some inverse RELA values were inferred during Metathesaurus source processing
MRREL.RELA/Inverse RELA (REL = "RO")
adheres_to adheres_to/has_adherent
adjacent_to/adjacent_to adjacent_to/adjacent_to
afferent_to/efferent_to afferent_to/efferent_to
anatomical_entity_observed anatomical_entity_observed_in/has_observed_anatomical_entity
anterior_to/posterior_to anterior_to/posterior_to
anteroinferior_to/posterosuperior_to anteroinferior_to/posterosuperior_to
anterolateral_to/posteromedial_to anterolateral_to/posteromedial_to
anteromedial_to/posterolateral_to anteromedial_to/posterolateral_to
anterosuperior_to/posteroinferior_to anterosuperior_to/posteroinferior_to
arterial_supply_of/arterial_supply arterial_supply_of/has_arterial_supply
articulates_with/articulates_with articulates_with/articulates_with
attaches_to/receives_attachment_from attaches_to/receives_attachment_from
bounded_by/bounds bounded_by/bounds
branch_of/has_branch branch_of/has_branch
connected_to connected_to/connected_to
connection_type connection_type_of/has_connection_type
constitutional_part/constitutional_part_of constitutional_part_of/has_constitutional_part
contained_in/contains contained_in/contains
branch__continuity_ continuation_branch_of/has_continuation_branch
continuous_distally_with/continuous_proximally_with continuous_distally_with/continuous_proximally_with
continuous_with continuous_with/continuous_with
corresponds_to/corresponds_to corresponds_to/corresponds_to
derives/derives_from derives/derives_from
development_type development_type_of/has_development_type
developmental_stage_of/has_developmental_stage developmental_stage_of/has_developmental_stage
develops_into/develops_from develops_into/develops_from
direct_cell_shape_of/has_direct_cell_shape direct_cell_shape_of/has_direct_cell_shape
direct_left_of/direct_right_of direct_left_of/direct_right_of
distal_to/proximal_to distal_to/proximal_to
drains_into/receives_drainage_from drains_into/receives_drainage_from
external_to external_to/internal_to
forms formed_by/forms
full_grown_phenotype full_grown_phenotype_of/has_full_grown_phenotype
fuses_with fuses_with/fuses_with
fusion_of fusion_of/has_fusion
germ_origin germ_origin_of/has_germ_origin
has_inherent_3-D_shape/inherent_3-D_shape has_inherent_3d_shape/inherent_3d_shape_of
has_insertion/insertion_of has_insertion/insertion_of
inferolateral_to/superomedial_to inferolateral_to/superomedial_to
inferomedial_to/superolateral_to inferomedial_to/superolateral_to
located_in/location_of has_location/location_of
lymphatic_drainage/lymphatic_drainage_of has_lymphatic_drainage/lymphatic_drainage_of
matures_from/matures_into matures_from/matures_into
member/member_of has_member/member_of
nerve_supply/nerve_supply_of has_nerve_supply/nerve_supply_of
has_origin/origin_of has_origin/origin_of
part/part_of has_part/part_of
primary_segmental_supply/primary_segmental_supply_of has_primary_segmental_supply/primary_segmental_supply_of
has_projection/receives_projection has_projection/receives_projection
regional_part/regional_part_of has_regional_part/regional_part_of
related_developmental_entity has_related_developmental_entity/related_developmental_entity_of
related_part/related_part related_part/related_part
secondary_segmental_supply/secondary_segmental_supply_of has_secondary_segmental_supply/secondary_segmental_supply_of
segmental_composition/segmental_composition_of has_segmental_composition/segmental_composition_of
segmental_supply/segmental_supply_of has_segmental_supply/segmental_supply_of
tributary/tributary_of has_tributary/tributary_of
venous_drainage/venous_drainage_of has_venous_drainage/venous_drainage_of
homonym_for/homonym_of homonym_for/homonym_of
inferior_to/superior_to inferior_to/superior_to
lateral_to/medial_to lateral_to/medial_to
left_lateral_to/right_medial_to left_lateral_to/right_medial_to
left_medial_to/right_lateral_to left_medial_to/right_lateral_to
merges_with merges_with/merges_with
projects_from/projects_to projects_from/projects_to
receives_input_from/sends_output_to receives_input_from/sends_output_to
related_object related_object/related_object
surrounded_by/surrounds surrounded_by/surrounds
transforms_from/transforms_into transforms_from/transforms_into