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Unified Medical Language System (UMLS)

HGNC (HUGO Gene Nomenclature Committee) - Metathesaurus Representation


This page lists UMLS Metathesaurus data elements and traces them back to the specific source data that populates them.

Skip to: Atoms, Attributes, Definitions, Relationships, Mappings

VSAB: HGNC2017_05

Summary of Changes

New data field and corresponding new ATN:

  • field: rna_cental_ids; ATN = RNA_CENTRAL_ID

Original Files:

File NameDescription
hgnc_complete_set_05042017.txtTab-delimited text file (UTF-8).

Identifiers

  • CODE: HGNC ID
  • SAUI: Not applicable
  • SCUI: HGNC ID
  • SDUI: Not applicable

Atoms (MRCONSO)

Term TypeDescriptionOrigin
ACR Acronym symbol field
MTH_ACR Metathesaurus created acronym. The word 'gene' or 'gene cluster' was appended to the atom. symbol field
NA Alias Name alias_name field
PT Preferred Name name field
SYN Synonyms alias_symbol field

Suppressibility

For all term types, suppressibility value 'N' (default value)


Attributes (MRSAT)

Attribute NameOrigin
GENESYMBOL symbol field
CCDS_ID ccds_id field
CYTOGENETIC_LOCATION location field
DATE_CREATED date_approved_reserved field
DATE_LAST_MODIFIED date_modified field
DATE_NAME_CHANGED date_name_changed field
DATE_SYMBOL_CHANGED date_symbol_changed field
DB_XR_ID|COSMIC: cosmic field
DB_XR_ID|MiRBase: mirbase field
DB_XR_ID|HomeoDB: homeodb field
DB_XR_ID|snoRNABase: snornabase field
DB_XR_ID|BioParadigms: bioparadigms_slc field
DB_XR_ID|Orphanet: orphanet field
DB_XR_ID|Pseudogene.org: pseudogene.org field
DB_XR_ID|HORDE_ID: horde_id field
DB_XR_ID|MEROPS: merops field
DB_XR_ID|IMGT/GENE-DB: imgt field
DB_XR_ID|IUPHAR: iuphar field
DB_XR_ID|KZNF Gene Catalog: kznf_gene_catalog field
DB_XR_ID|Mamit-tRNAdb: mamit-trnadb field
DB_XR_ID|CD: cd field
DB_XR_ID|lncRNAdb: lncrnadb field
DB_XR_ID|Intermediate Filament DB: intermediate_filament_db field
ENA ena field
ENSEMBLGEN_ID ensembl_gene_id field
ENTREZGENE_ID entrez_id field
EZ enzyme_id field
GENE_FAM_DESC gene_family field
GENE_FAM_ID gene_family_id field
LOCUS_GROUP locus_group field
LOCUS_SPECIFIC_DB_XR lsdb field
LOCUS_TYPE locus_type field
MGD_ID mgd_id field
OMIM_NUMBER omim_id field
PREV_NAME prev_name field
PREV_SYMBOL prev_symbol field
PMID pubmed_id field
REFSEQ_ID refseq_accession field
RGD_ID rgd_id field
RNA_CENTRAL_ID rna_central_id
MAPPED_UCSC_ID ucsc_id field
SWP uniprot_ids field
VEGA_ID vega_id field

Relationships (MRREL)

SourceRelationshipRelationship Label/Inverse Relationship LabelDescription
HUGOCHD
PAR
SIB
(no rela)There are no CONTEXTS.
HUGOSFO/LFO has_expanded_form/expanded_form_ofConnects the symbol (TTY=ACR) with its expanded form (TTY=MTH_ACR).
HUGOSFO/LFO has_alias/alias_ofConnects the name (TTY=PT) with its alias_symbol (TTY=SYN).

Definitions (MRDEF)

There are no definitions.

Mappings (MRMAP)

There are no mappings present.