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Trans-NIH BioMedical Informatics Coordinating Committee (BMIC)

NIH Data Sharing Repositories

This table lists NIH-supported data repositories that make data accessible for reuse. Most accept submissions of appropriate data from NIH-funded investigators (and others), but some restrict data submission to only those researchers involved in a specific research network. Also included are resources that aggregate information about biomedical data and information sharing systems. The table can be sorted according by name and by NIH Institute or Center and may be searched using keywords so that you can find repositories more relevant to your data. Links are provided to information about submitting data to and accessing data from the listed repositories. Additional information about the repositories and points-of-contact for further information or inquiries can be found on the websites of the individual repositories. Are we missing a data sharing repository? Contact us.

ICRepository NameRepository DescriptionData Submission PolicyAccess to Data
NICHD FluencyBank FluencyBank is a shared database for the study of the development of fluency in both normal and disordered populations. Participants include normally-developing monolingual and bilingual children, children with disfluencies (CWD), adults with disfluencies (AWSD), and second language learners. How to submit data to FluencyBank How to access FluencyBank data
NIMH NeuroVault Repository description: A public repository of unthresholded statistical maps (group and single subject), parcellations, and atlases of the human brain. The platform allows public (under CC0 license) and private sharing and also provide data analysis and discovery tools. How to submit data to NeuroVault How to access NeuroVault data
NIMH OpenfMRI The OpenfMRI database is a curated public repository of human and non-human brain imaging data collected using MRI technique (potentially with additional PET, EEG and MEG data). No registration or license agreement is required to obtain the data, which is distributed, by default, using a Public Domain license. This is possible because data are anonymized before distribution to protect the confidentiality of participants. How to submit data to OpenfMRI How to access OpenfMRI data
NICHD National Children’s Study (NCS) Archive The NCS Archive, a data and sample repository for the National Children’s Study, provides access to data and samples collected from over 5,600 U.S. birth families to study environmental influences on child health and development. Data and biological and environmental samples are freely available, with an approved request, for scientific research. How to submit data to NCS How to access NCS data
NCI Cancer Nanotechnology Laboratory (caNanoLab) caNanoLab is a data sharing portal designed to facilitate information sharing in the biomedical nanotechnology research community to expedite and validate the use of nanotechnology in biomedicine. caNanoLab provides support for the annotation of nanomaterials with characterizations resulting from physico-chemical, in vitro, and in vivo assays and the sharing of these characterizations and associated nanotechnology protocols in a secure fashion. How to submit your data to caNanoLab How to access caNanoLab data
NCI (NHGRI, NIGMS) PeptideAtlas PeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. How to submit data to PeptideAtlas How to access Peptide Atlas data
NEI EyeGENE® The eyeGENE® Biorepository and corresponding Database contain family history and clinical eye exam data from subjects enrolled in eyeGENE® Program coupled to clinical grade DNA samples. This data and samples are submitted by collaborators throughout the US and Canada and the data is available on a controlled access basis to researchers world-wide. How to submit data to EyeGENE® How to access EyeGENE® data
NHGRI FlyBase: A Drosophila Genomic and Genetic Database Drosophila Genomic and Genetic database that includes proteomics data, microarrays and Tiling BAC's. How to submit data to Flybase How to access Flybase data
NHGRI/NIGMS The Universal Protein Resource (UniProt) The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc). How to submit data to UniProt How to access UniProt data
NHGRI The Zebrafish Model Organism Database (ZFIN) ZFIN serves as the zebrafish model organism database. It aims to: a) be the community database resource for the laboratory use of zebrafish, b) develop and support integrated zebrafish genetic, genomic and developmental information, c) maintain the definitive reference data sets of zebrafish research information, d) to link this information extensively to corresponding data in other model organism and human databases, e) facilitate the use of zebrafish as a model for human biology, and f) serve the needs of the research community. How to submit data to ZFIN How to access ZFIN data
NHGRI WormBase WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and related nematodes. How to submit data to WormBase How to access WormBase data
NHLBI Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) The goal of BioLINCC is to facilitate and coordinate the existing activities of the NHLBI Biorepository and the Data Repository and to expand their scope and usability to the scientific community through a single web-based user interface. How to submit data to BioLINCC How to access BioLINCC data
NHLBI Rat Genome Database (RGD) The Rat Genome Database (RGD) is a collaborative effort between leading research institutions involved in rat genetic and genomic research to collect, consolidate, and integrate data generated from ongoing rat genetic and genomic research efforts and make these data widely available to the scientific community. How to submit data to RGD How to access RGD data
NHLBI Integrating Data for Analysis, Anonymization, and Sharing (iDASH) iDASH, the newest Common Fund National Center for Biomedical Computing, addresses fundamental challenges to research progress and enables global collaborations anywhere and anytime. iDASH offers a secure cyberinfrastructure and tools to support a privacy-preserving data repository and open source software. iDASH also is active in research and training in its mission area. How to submit data to iDASH How to access iDASH data[PDF]
NHLBI The Cardiovascular Research Grid (CVRG) The CardioVascular Research Grid (CVRG) project is creating an infrastructure for sharing cardiovascular data and data analysis tools. CVRG tools are developed using the Software as a Service model, allowing users to access tools through their browser, thus eliminating the need to install and maintain complex software. How to submit data to CVRG How to access CVRG data
NIA The National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS)  The National Institute on Aging Genetics of Alzheimer's Disease Data Storage Site (NIAGADS) is a national genetics data repository facilitating access to genotypic and phenotypic data for Alzheimer's disease (AD). Data include GWAS, whole genome (WGS) and whole exome (WES), expression, RNA Seq, and CHIP Seq analyses. Data for the Alzheimer’s Disease Sequencing Project (ADSP) are available through a partnership with dbGaP (ADSP at dbGaP). Results are integrated and annotated in the searchable genomics database that also provides access to a variety of software packages, analytic pipelines, online resources, and web-based tools to facilitate analysis and interpretation of large-scale genomic data. Data are available as defined by the NIA Genomics of Alzheimer’s Disease Sharing Policy and the NIH Genomics Data Sharing Policy. Investigators return secondary analysis data to the database in keeping with the NIAGADS Data Distribution Agreement. How to submit data to NIAGADS How to access NIAGADS data
NIAID BEI Resource Repository BEI Resources provides reagents, tools and information for studying Category A, B, and C priority pathogens, emerging infectious disease agents, non-pathogenic microbes and other microbiological materials of relevance to the research community. How to submit data to BEI Resource Repository How to access BEI data
NIAID Eukaryotic Pathogen Database Resources (EuPathDB) EuPathDB Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Diseases is a portal for accessing genomic-scale datasets associated with the eukaryotic pathogens. How to submit data to EuPathDB How to access EuPathDB data
NIAID Immune Epitope Database and Analysis Resource (IEDB) This repository contains antibody/B cell and T cell epitope information and epitope prediction and analysis tools for use by the research community worldwide. Immune epitopes are defined as molecular structures recognized by specific antigen receptors of the immune system, namely antibodies, B cell receptors, and T cell receptors. Immune epitopes from infectious diseases, excluding HIV, and immune-mediated diseases and the accompanying biological information are included. How to submit data to IEDB How to access IEDB data
NIAID The Immunology Database and Analysis Portal (ImmPort) The ImmPort system serves as a long-term, sustainable archive of immunology research data generated by investigators mainly funded through the NIAID/DAIT. The core component of the ImmPort system is an extensive data warehouse containing an integration of experimental data and clinical trial data. The ImmPort system also provides data analysis tools and an immunology-focused ontology. The analytical tools created and integrated as part of the ImmPort system are available to any researcher within ImmPort after registration and approval by DAIT. Additionally, the data provided mainly by NIAID/DAIT funded researchers in ImmPort will be available to all registered users after the appropriate embargo time. How to submit data to ImmPort [PDF] How to access ImmPort data
NIAID Influenza Research Database (IRD) The Influenza Research Database (IRD) serves as a public repository and analysis platform for flu sequence, experiment, surveillance and related data. How to submit data to IRD How to access IRD data
NIAID TrialShare The immune tolerance data management and visualization portal for studies sponsored by the Immune Tolerance Network (ITN) and collaborating investigators. Data from published studies are accessible to any user; data from current in-progress studies are accessible to study investigators and collaborators. Includes links to published Figures, tools for visualization and analysis of data, and ability to query study data by subject, group, or any other study parameter. TrialShare data are submitted by the Immune Tolerance Network How to access TrialShare data [PDF]
NIAID VectorBase VectorBase is a Bioinformatics Resource Center for invertebrate vectors. It is one of four Bioinformatics Resource Centers funded by NIAID to provide web-based resources to scientific community conducting basic and applied research on organisms considered potential agents of biowarfare or bioterrorism or causing emerging or re-emerging diseases. How to submit data to VectorBase How to access VectorBase data
NIBIB LONI Database The LONI Image Data Archive (IDA) is a user-friendly environment for archiving, searching, sharing, tracking and disseminating neuroimaging and related clinical data. The IDA is utilized for dozens of neuroimaging research projects across North America and Europe and accommodates MRI, PET, MRA, DTI and other imaging modalities. How to submit data to LONI [PDF] How to access LONI data [PDF]
NIBIB Multiparameter Intelligent Monitoring in Intensive Care II (MIMIC-II) The objective of this Bioengineering Research Partnership is to focus the resources of a powerful interdisciplinary team from academia (MIT), industry (Philips Medical Systems) and clinical medicine (Beth Israel Deaconess Medical Center) to develop and evaluate advanced ICU patient monitoring systems that will substantially improve the efficiency, accuracy and timeliness of clinical decision making in intensive care. How to submit data of MIMIC-II How to access MIMIC-II data
NIBIB Nanomaterial Registry By leveraging and developing a set of Minimal Information About Nanomaterials (MIAN), ontology and standards through a community effort, it has developed a data model for data collection and sharing in the nanotechnology field. It facilitates data validation and data quality improvement. It is a data-driven tool aimed at enabling researchers to close knowledge gap. How to submit data to Nanomaterial Registry How to access Nanomaterial Registry data
NIBIB (NIMH, NIDA) Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) facilitates finding and comparing neuroimaging resources for functional and structural neuroimaging analyses—including popular tools as well as those that once might have been hidden in another researcher's laboratory or some obscure corner of cyberspace. How to submit data to NITRC How to access NITRC data
NICHD Biospecimen Repository Access and Data Sharing (BRADS) BRADS is a repository for data and biospecimens from population health research initiatives and clinical or interventional trials designed and implemented by NICHD’s Division of Intramural Population Health Research (DIPHR). Topics include human reproduction and development, pregnancy, child health and development, and women’s health. The website is maintained by DIPHR. Not currently accepted How to access BRADS data
NICHD Child Language Data Exchange System (CHILDES) CHILDES is a system for sharing and analyzing conversational interactions. How to submit data to CHILDES How to access CHILDES data
NICHD Data and Specimen Hub (DASH) NICHD DASH is a centralized resource for researchers to store and access de-identified data from NICHD funded research studies for the purposes of secondary research use. It serves as a mechanism for NICHD-funded extramural and intramural investigators to share research data from studies in accordance with the NIH Data Sharing Policy and the NIH Genomic Data Sharing Policy. How to submit data to DASH How to access DASH data
NICHD PhonBank PhonBank is an open database for the study of early phonological development using the Phon program. How to submit data to PhonBank How to access PhonBank data
NICHD Xenbase Xenbase is a Xenopus laevis and Xenopus tropicalis biology and genomics resource. How to submit data to Xenbase How to access Xenbase data
NIDA Mouse Phenome Database (MPD) The Mouse Phenome Database (MPD) has characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries and to assist in selection of strains for experimental studies. How to submit data to MPD How to access MPD data
NIDCD AphasiaBank AphasiaBank is a shared database of multimedia interactions for the study of communication in aphasia. How to submit data to AphasiaBank How to access AphasiaBank data
NIDA National Addiction & HIV Data Archive Program (NAHDAP) NAHDAP acquires, preserves and disseminates data relevant to drug addiction and HIV research. By preserving and making available an easily accessible library of electronic data on drug addiction and HIV infection in the United States, NAHDAP offers scholars the opportunity to conduct secondary analysis on major issues of social and behavioral sciences and public policy. How to submit data to NAHDAP How to access NAHDAP data
NIDA NIDA Data Share A repository of data from completed CTN and DTMC clinical trials to be distributed to investigators in order to promote new research, encourage further analyses, and disseminate information to the community. Secondary analyses produced from data sharing multiply the scientific contribution of the original research. How to submit data to NIDA Data Share How to access NIDA Data Share data
NIDA NIDA Center for Genetics Studies Blood and other biospecimens along with phenotypic data collected, archived and stored. How to submit data to the NIDA Center for Genetics Studies How to access NIDA Center for Genetics Studies data
NIDA Neuroscience Information Framework (NIF) NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. How to submit data to NIF How to access NIF data
NIDA, NINDS NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications. It contains contributions from over 80 laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. How to submit data to NeuroMorpho How to access NeuroMorpho data 
NIDDK Metabolomics Workbench (MetWB) The Metabolomics Program's Data Repository and Coordinating Center (DRCC), housed at the San Diego Supercomputer Center (SDSC), University of California, San Diego, has developed the Metabolomics Workbench. MetWB will serve as a national and international repository for metabolomics data and metadata and will provide analysis tools and access to metabolite standards, protocols, tutorials, training, and more. How to submit data to MetWB How to access MetWB data
NIDDK NIDDK Central Repository The NIDDK Central Repository stores biosamples, genetic and other data collected in designated NIDDK-funded clinical studies. The purpose of the NIDDK Central Repository is to expand the usefulness of these studies by allowing a wider research community to access data and materials beyond the end of the study. How to submit data to NIDDK Central Repository How to access NIDDK Central Repository data
NIDDK NIDDK Information Network (DKnet) The NIDDK Information Network serves the needs of basic and clinical investigators by providing seamless access to large pools of data relevant to the mission of NIDDK. The goal of DKnet is to develop a community-based network for integration across disciplines to include the larger DK universe of diseases, investigators, and potential users. How to submit data to DKnet How to access DKnet data
NIDDK Nuclear Receptor Signaling Atlas (NURSA) The Nuclear Receptor Signaling Atlas (NURSA) is designed to foster the development of a comprehensive understanding of the structure, function, and role in disease of nuclear receptors (NRs) and coregulators. NURSA seeks to elucidate the roles played by NRs and coregulators in metabolism and the development of metabolic disorders (including type 2 diabetes, obesity, osteoporosis, and lipid dysregulation), as well as in cardiovascular disease, oncology, regenerative medicine and the effects of environmental agents on their actions. How to submit data to NURSA How to access NURSA data
NIGMS Cell Centred Database (CCDB) The Cell Centered Database (CCDB) is a web accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging. How to submit data CCDB How to access CCDB data
NIGMS PhysioNet The PhysioNet Resource is intended to stimulate current research and new investigations in the study of complex biomedical and physiologic signals. It offers free web access to large collections of recorded physiologic signals (PhysioBank) and related open-source software (PhysioToolkit). How to submit data to PhysioNet How to access PhysioNet data
NIGMS Transporter Classification Database (TCDB) The Transporter Classification Database details a comprehensive classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, except that it incorporates both functional and phylogenetic information. Descriptions, TC numbers, and examples of over 600 families of transport proteins are provided. How to submit data to TCDB How to access TCDB data
NIGMS Database of Interacting Proteins (DIP) The DIP database catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. The data stored within the DIP database are curated both manually by expert curators and also automatically using computational approaches that utilize the the knowledge about the protein-protein interaction networks extracted from the most reliable, core subset of the DIP data. How to submit data to DIP How to access DIP data
NIGMS (NLM, NCI, NINS, NIDDK) Protein Data Bank (PDB) The Protein Data Bank (PDB) archive is the single worldwide repository of information about the 3D structures of large biological molecules, including proteins and nucleic acids found in all organisms including bacteria, yeast, plants, flies, other animals, and humans. How to submit data to PDB How to access PDB data
NIH Biological General Repository for Interaction Datasets (BioGRID) BioGRID is an online interaction repository with data on raw protein and genetic interactions from major model organism species. All interaction data are freely provided through our search index and available via download in a wide variety of standardized formats. How to submit data to BioGRID How to access BioGRID data
NIH (NIA, NICHD, NIDA) Inter-university Consortium for Political and Social Research (ICPSR) ICPSR maintains a data archive of more than 500,000 files of research in the social sciences. It hosts 16 specialized collections of data in education, aging, criminal justice, substance abuse, terrorism, and other fields. How to submit data to ICPSR How to access ICPSR data
NIHGRI (NICHD, NCI) Mouse Genome Informatics (MGI) MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease. How to submit data to MGI How to access MGI data
NIMH Human Connectome Project The Human Connectome Project is comprehensively mapping human brain circuitry in 1200 healthy adults using cutting-edge methods of noninvasive neuroimaging. Imaging, behavioral data, and genomic data are all made freely available to the research community as the data is collected. In addition, other laboratories using similar data collection techniques are releasing their data via this web site. Coming soon How to access Human Connectome Project data
NIMH National Database for Autism Research (NDAR) National Database for Autism Research (NDAR) is an extensible, scalable informatics platform for austism spectrum disorder-relevant data at all levels of biological and behavioral organization (molecules, genes, neural tissue, behavioral, social and environmental interactions) and for all data types (text, numeric, image, time series, etc.). NDAR was developed to share data across the entire ASD field and to facilitate collaboration across laboratories, as well as interconnectivity with other informatics platforms. How to submit data to NDAR How to access NDAR data
NIMHNational Database for Clinical Trials Related to Mental Illness (NDCT)The National Database for Clinical Trials Related to Mental Illness (NDCT) is an extensible informatics platform for relevant data at all levels of biological and behavioral organization (molecules, genes, neural tissue, behavioral, social and environmental interactions) and for all data types (text, numeric, image, time series, etc.) related to clinical trials funded by the National Institute of Mental Health. Sharing data, associated tools, methodologies and results, rather than just summaries or interpretations, accelerates research progress. Community-wide sharing requires common data definitions and standards, as well as comprehensive and coherent informatics approaches for the sharing of de-identified human subject research data. Built on the National Database for Autism Research (NDAR) informatics platform, NDCT provides a comprehensive data sharing platform for NIMH grantees supporting clinical trials. How to submit data to NDCT How to access NDCT data
NIMHPediatric MRIThe NIH Study of Normal Brain Development is a longitudinal study using anatomical MRI, diffusion tensor imaging (DTI), and MR spectroscopy (MRS) to map pediatric brain development. N/A How to access Pediatric MRI data
NIMHRDoCdbRDoCdb supports the Research Domain Criteria Initiative (RDoC), which calls for the development, for research purposes, of new ways of classifying psychopathology based on dimensions of observable behavior and neurobiological measures by providing the research community a data repository for the sharing of research data related to this initiative. How to submit data to RDoCdb   How to access RDoCdb data
NIMHNIMH Repository and Genomics Resources (RGR)The NIMH Repository and Genomics Resource (RGR) stores biosamples, genetic, pedigree and clinical data collected in designated NIMH-funded human subject studies. The RGR database likewise links to other repositories holding data from the same subjects, including dbGAP, GEO and NDAR. The NIMH RGR allows the broader research community to access these data and biospecimens (e.g., lymphoblastoid cell lines, induced pluripotent cell lines, fibroblasts) and further expand the genetic and molecular characterization of patient populations with severe mental illness. How to submit data to RGR How to access RGR data
NINDS Federal Interagency Traumatic Brain Injury Research (FITBIR) Informatics System The Federal Interagency Traumatic Brain Injury Research (FITBIR) informatics system is an extensible, scalable informatics platform for TBI relevant imaging, assessment, genomics, and other data types. It was developed to share data across the entire TBI research field and to facilitate collaboration between laboratories, as well as interconnectivity with other informatics platforms. How to submit data to FITBIR How to access FITBIR data
NINDS Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR) The NINDS Parkinson’s Disease (PD) Biomarkers Program Data Management Resource enables web-based data entry for clinical studies supporting PD biomarker development, as well as broad data sharing (imaging, clinical, genetic, and biospecimen analysis) across the entire PD research community. The PDBP DMR coordinates information and access to PD biospecimens distributed through the NINDS Human Genetics, DNA, iPSC , Cell Line and Biospecimen Repository and the Harvard Neurodiscovery Initiative. How to submit data to PDBP DMR How to access PDBP DMR data
NLM database of Genotypes and Phenotypes (dbGaP) The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype. How to submit data to dbGaP How to access dbGaP data
NLM PubChem PubChem provides information on the biological activities of small molecules. PubChem is organized as three linked databases (bioassay, compound, and substance data) within the NCBI's Entrez information retrieval system. How to submit data to PubChem How to access PubChem data
NLM is a registry and results database of publicly and privately supported clinical studies of human participants conducted around the world. How to submit data to How to access data
NLM GenBank GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. GenBank is designed to provide and encourage access within the scientific community to the most up to date and comprehensive DNA sequence information. How to submit data to GenBank  How to access GenBank data
NLM Gene Expression Omnibus (GEO) Gene Expression Omnibus is a public functional genomics data repository supporting MIAME-compliant submissions of array- and sequence-based data. Tools are provided to help users query and download experiments and curated gene expression profiles. How to submit data to GEO How to access GEO data
NLM dbSNP dbSNP is a database of single nucleotide polymorphisms (SNPs) and multiple small-scale variations that include insertions/deletions, microsatellites, and non-polymorphic variants. How to submit data to dbSNP How to access dbSNP data
NLM dbVar dbVar is a database of genomic structural variation. It accepts data from all species and includes clinical data. It can accept diverse types of events, including inversions, insertions and translocations. Additionally, both germline and somatic variants are accepted. How to submit data to dbVar How to access dbVar data
NLM Sequence Read Archive (SRA) The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome Analyzer®, Applied Biosystems SOLiD® System, Helicos Heliscope®, Complete Genomics®, and Pacific Biosciences SMRT®. How to submit data to SRA How to access SRA data
NCI The Cancer Imaging Archive (TCIA) The image data in The Cancer Imaging Archive (TCIA) is organized into purpose-built collections of subjects. The subjects typically have a cancer type and/or anatomical site (lung, brain, etc.) in common. How to submit data to TCIA How to access TCIA data
NIA AMP-AD Knowledge Portal The AMP-AD Knowledge Portal is the NIA-designated repository for distribution of various types of molecular data from human, cell-based and animal model biosamples, analytical results and research tools generated through multiple NIA-supported programs. Currently the Portal supports the AMP-AD Target Discovery and Preclinical Validation and M²OVE-AD Consortia and the translational center, MODEL-AD. How to submit data to AMP-AD Knowledge Portal How to access AMP-AD Knowledge Portal data


This table lists NIH-supported d