Unified Medical Language System® (UMLS®)
2012AB NCI Thesaurus Source Information
VSAB: NCI2012_02D
Summary of Changes
New term type: NICHDABNew attribute name (ATN): CHEBI_ID
Deprecated attribute names (ATN):
- MITELMAN_CODE
- RELATED_LASH_CONCEPT
- RELATED_MEDDRA_CODE
- cytogenetic_abnormality_involves_chromosome
- disease_mapped_to_chromosome
- disease_mapped_to_gene
- gene_involved_in_pathogenesis_of_disease
- gene_mutant_encodes_gene_product_sequence_variation
- gene_product_sequence_variation_encoded_by_gene_mutant
- molecular_abnormality_involves_gene
Original Files:
| File Name | Description |
|---|---|
| ThesaurusInferred.owl | Complete source data in an OWL By Code formatted file. |
| NCI2012_12.02d.txt | Configuration file. |
Identifiers
- CODE: NCI code (e.g., C191)
- SAUI: Not applicable
- SCUI: NCI code (e.g., C191)
- SDUI: Not applicable
Atoms (MRCONSO)
)Term types are created by combining the root source name with the term type. For example, the source UCUM (Unified Code for Units of Measure) with a term type of PT will be represented as 'UCUMPT'. If there is no source name as a prefix to the term type (e.g., AB) then the source is presumed to be 'NCI'.
The source names and term types are extracted from the field tagged, '<P90...<ncicp:term-name>...lt;/ncicp:term-name><ncicp:term-group>...</ncicp:term-group>...</P90>' (FULL_SYN).
| Term Type | Description |
|---|---|
| AB | Abbreviation |
| AD | Adjective |
| BioCPT | BioCarta online maps of molecular pathways, adapted for NCI, preferred name |
| BioCSY | BioCarta online maps of molecular pathways, adapted for NCI, synonym |
| BN | Fully-specified drug brand name that can not be prescribed |
| BRIDGPT | Biomedical Research Integrated Domain Group Model preferred name |
| CA2 | ISO 3166-1 standard country code in alpha-2 (two-letter) format |
| CA3 | ISO 3166-1 standard country code in alpha-3 (three-letter) format |
| CCN | Chemical code name |
| CCS | FIPS 10-4 country code |
| CDCPT | U.S. Centers for Disease Control and Prevention preferred name |
| CDISCPT | Clinical Data Interchange Standards Consortium preferred name |
| CDISCSY | Clinical Data Interchange Standards Consortium synonym |
| CRCHPT | Cancer Research Center of Hawaii preferred name |
| CRCHSY | Cancer Research Center of Hawaii synonym |
| CSN | Chemical Structure Name |
| CTCAEPT | Common Terminology Criteria for Adverse Events preferred name |
| DCPPT | NCI Division of Cancer Prevention Program preferred name |
| DCPSY | NCI Division of Cancer Prevention Program synonym |
| DICOMPT | Digital Imaging Communications in Medicine preferred name |
| DN | Display name |
| DTPPT | NCI Developmental Therapeutics Program preferred name |
| DTPSY | NCI Developmental Therapeutics Program synonym |
| FBD | Foreign brand name |
| FDAAB | U.S. Food and Drug Administration abbreviation |
| FDAPT | U.S. Food and Drug Administration preferred name |
| FDASY | U.S. Food and Drug Administration synonym |
| HD | Hierarchical descriptor |
| ICHAB | International Conference on Harmonization abbreviation |
| ICHPT | International Conference on Harmonization preferred name |
| ICHSY | International Conference on Harmonization synonym |
| JAXPT | Jackson Laboratories Mouse Terminology, adapted for NCI use, preferred name |
| JAXSY | Jackson Laboratories Mouse Terminology, adapted for NCI use, synonym |
| KEGGAB | Kyoto Encyclopedia of Genes and Genomes (KEGG), KEGG Pathway Database, adapted for NCI use, abbreviation |
| KEGGPT | Kyoto Encyclopedia of Genes and Genomes (KEGG), KEGG Pathway Database, adapted for NCI use, preferred name |
| KEGGSY | Kyoto Encyclopedia of Genes and Genomes (KEGG), KEGG Pathway Database, adapted for NCI use, synonym |
| NCI-GLOSSOP | NCI Dictionary of Cancer Terms obsolete preferred name |
| NCI-GLOSSPT | NCI Dictionary of Cancer Terms preferred name |
| NCI-GLOSSSY | NCI Dictionary of Cancer Terms synonym |
| NCI-HL7AB | NCI Health Level 7 abbreviation |
| NCI-HL7PT | NCI Health Level 7 preferred name |
| NCI-HL7SY | NCI Health Level 7 synonym |
| NCPDPPT | National Council for Prescription Drug Programs preferred name |
| NICHDAB | National Institute of Child Health and Human Development abbreviation |
| NICHDPT | National Institute of Child Health and Human Development preferred name |
| NICHDSY | National Institute of Child Health and Human Development synonym |
| OP | Obsolete preferred name |
| PIDPT | National Cancer Institute Nature Pathway Interaction Database preferred name |
| PT | Preferred name |
| RENIDN | Registry Nomenclature Information display name |
| SY | Synonym |
| UCUMAB | Unified Code for Units of Measure abbreviation |
| UCUMPT | Unified Code for Units of Measure preferred name |
| UCUMSY | Unified Code for Units of Measure synonym |
| ZFINPT | Zebrafish Model Organism Database preferred name |
| ZFINSY | Zebrafish Model Organism Database synonym |
Suppressibility
For term types CCN and CCS, the suppressibility value is 'Y' (suppressible). For term type OP, the value is 'O' (obsolete). For all others, the value is 'N' (not suppressible).
Attributes (MRSAT)
)| Attribute Name | Origin: OWL tag |
|---|---|
| ACCEPTED_THERAPEUTIC_USE_FOR | <P302 rdf:datatype="http://www.w3.org.../P302> |
| BIOCARTA_ID | <P216 rdf:datatype="http://www.w3.org.../P216> |
| CAS_REGISTRY | <P210 rdf:datatype="http://www.w3.org.../P210> |
| CHEBI_ID | <P368 rdf:datatype="http://www.w3.org.../P368> |
| CHEMICAL_FORMULA | <P350 rdf:datatype="http://www.w3.org.../P350> |
| CNU | '<P90...ncicp:term-group' field = CNU |
| CONTRIBUTING_SOURCE | <P322 rdf:datatype="http://www.w3.org.../P322> |
| DESIGN_NOTE | <P98 rdf:datatype="http://www.w3.org.../P98> |
| ENTREZGENE_ID | <P321 rdf:datatype="http://www.w3.org.../P321> |
| ESSENTIAL_AMINO_ACID | <P356 rdf:datatype="http://www.w3.org.../P356> |
| ESSENTIAL_FATTY_ACID | <P357 rdf:datatype="http://www.w3.org.../P357> |
| EXTENSIBLE_LIST | <P361 rdf:datatype="http://www.w3.org.../P361> |
| FDA_TABLE | <P317 rdf:datatype="http://www.w3.org.../P317> |
| FDA_UNII_CODE | <P319 rdf:datatype="http://www.w3.org.../P319> |
| GENEBANK_ACCESSION_NUMBER | <P102 rdf:datatype="http://www.w3.org.../P102> |
| GENE_ENCODES_PRODUCT | <P96 rdf:datatype="http://www.w3.org.../P96> |
| GO_ANNOTATION | <P211 rdf:datatype="http://www.w3.org.../P211> |
| HOMOLOGOUS_GENE | <P101 rdf:datatype="http://www.w3.org.../P101> |
| ICD-O-3_CODE | <P334 rdf:datatype="http://www.w3.org.../P334> |
| INFOODS | <P353 rdf:datatype="http://www.w3.org.../P353> |
| KEGG_ID | <P215 rdf:datatype="http://www.w3.org.../P215> |
| LEXICAL_TAG | '<P90...ncicp:term-group' = FB or BR |
| MACRONUTRIENT | <P360 rdf:datatype="http://www.w3.org.../P360> |
| MGI_ACCESSION_ID | <P332 rdf:datatype="http://www.w3.org.../P332> |
| MICRONUTRIENT | <P359 rdf:datatype="http://www.w3.org.../P359> |
| MIRBASE_ID | <P362 rdf:datatype="http://www.w3.org.../P362> |
| NCBI_TAXON_ID | <P331 rdf:datatype="http://www.w3.org.../P331> |
| NEOPLASTIC_STATUS | <P363 rdf:datatype="http://www.w3.org.../P363> |
| NSC_CODE | <P175 rdf:datatype="http://www.w3.org.../P175> |
| NUTRIENT | <P358 rdf:datatype="http://www.w3.org.../P358> |
| OMIM_NUMBER | <P100 rdf:datatype="http://www.w3.org.../P100> |
| ORIG_CODE | '<P90...ncicp:source_code' field when the SAB is not NCI |
| PDQ_CLOSED_TRIAL_SEARCH_ID | <P330 rdf:datatype="http://www.w3.org.../P330> |
| PDQ_OPEN_TRIAL_SEARCH_ID | <P329 rdf:datatype="http://www.w3.org.../P329> |
| PID_ID | <P367 rdf:datatype="http://www.w3.org.../P367> |
| PUBMEDID_PRIMARY_REFERENCE | <P171 rdf:datatype="http://www.w3.org.../P171> |
| SUBSOURCE | <P92 rdf:datatype="http://www.w3.org.../P92> |
| SWISS_PROT | <P93 rdf:datatype="http://www.w3.org.../P93> |
| TOLERABLE_LEVEL | <P352 rdf:datatype="http://www.w3.org.../P352> |
| UNIT | <P355 rdf:datatype="http://www.w3.org.../P355> |
| USDA_ID | <P354 rdf:datatype="http://www.w3.org.../P354> |
| USE_FOR | <P333 rdf:datatype="http://www.w3.org.../P333> |
| US_RECOMMENDED_INTAKE | <P351 rdf:datatype="http://www.w3.org.../P351> |
Definitions (MRDEF)
)Only definitions with a source of NCI, NCI-GLOSS, or of an NCI subsource are included. Definitions are attached to their corresponding PT. For example, an NCI-GLOSS definition is attached to its NCI-GLOSS/PT. If there is no corresponding PT then the definition is attached to the NCI/PT. Definition attributions are enclosed within parentheses and appended to the definition.
Origin:Definition: <P97...ncicp:ComplexDefinition xmlns:ncicp.../P97>
Alt_Definition: <P325...ncicp:ComplexDefinition xmlns:ncicp.../P325>Relationships (MRREL)
)Origin of the relationship is derived from the "owl:onPropertyrdf..." code (Roles) and/or the "<A# rdf..." code (Associations). For example:
<rdfs:subClassOf><owl:Restriction>
<owl:onPropertyrdf:resource="#R.."/>
<owl:someValuesFromrdf:resource="#C.."/>
</owl:Restriction>
</rdfs:subClassOf>
<A1 rdf:resource="http://...owl#C..."/>
| Source | Relationship | Relationship Label/Inverse Relationship Label | Origin |
|---|---|---|---|
| NCI | NT | Conceptual_Part_Of/Has_Conceptual_Part | R27 |
| NCI | RT | Allele_Absent_From_Wild-type_Chromosomal_Location/Chromosomal_Location_of_Wild-type_Gene | R156 |
| NCI | RT | Allele_Associated_With_Disease/Disease_Associated_With_Allele | R151 |
| NCI | RT | Allele_Has_Abnormality/Abnormality_Associated_With_Allele | R153 |
| NCI | RT | Allele_Has_Activity/Activity_Of_Allele | R159 |
| NCI | RT | Allele_In_Chromosomal_Location/Chromosomal_Location_Of_Allele | R155 |
| NCI | RT | Allele_Not_Associated_With_Disease/Disease_Not_Associated_With_Allele | R152 |
| NCI | RT | Allele_Plays_Altered_Role_In_Process/Process_Altered_By_Allele | R158 |
| NCI | RT | Allele_Plays_Role_In_Metabolism_Of_Chemical_Or_Drug/Chemical_Or_Drug_Metabolism_Is_Associated_With_Allele | R160 |
| NCI | RT | Anatomic_Structure_Has_Location/Is_Location_Of_Anatomic_Structure | R81 |
| NCI | RT | Anatomic_Structure_Is_Physical_Part_Of/Has_Physical_Part_Of_Anatomic_Structure | R82 |
| NCI | RT | Biological_Process_Has_Associated_Location/Is_Location_Of_Biological_Process | R30 |
| NCI | RT | Biological_Process_Has_Initiator_Chemical_Or_Drug/Chemical_Or_Drug_Initiates_Biological_Process | R32 |
| NCI | RT | Biological_Process_Has_Initiator_Process/Process_Initiates_Biological_Process | R28 |
| NCI | RT | Biological_Process_Has_Result_AnatomyAnatomy_Originated_From_Biological_Process | R31 |
| NCI | RT | Biological_Process_Has_Result_Biological_Process/Biological_Process_Results_From_Biological_Process | R34 |
| NCI | RT | Biological_Process_Has_Result_Chemical_Or_Drug/Chemical_Or_Drug_Is_Product_Of_Biological_Process | R29 |
| NCI | RT | Biological_Process_Is_Part_Of_Process/Process_Includes_Biological_Process | R35 |
| NCI | RT | Chemical_Or_Drug_Affects_Abnormal_Cell/Abnormal_Cell_Affected_By_Chemical_Or_Drug | R150 |
| NCI | RT | Chemical_Or_Drug_Affects_Cell_Type_Or_Tissue/Cell_Type_Or_Tissue_Affected_By_Chemical_Or_Drug | R72 |
| NCI | RT | Chemical_Or_Drug_Affects_Gene_Product/Gene_Product_Affected_By_Chemical_Or_Drug | R146 |
| NCI | RT | Chemical_Or_Drug_Has_Mechanism_Of_Action/Is_Mechanism_Of_Action_Of_Chemical_Or_Drug | R124 |
| NCI | RT | Chemical_Or_Drug_Has_Physiologic_Effect/Is_Physiologic_Effect_Of_Chemical_Or_Drug | R125 |
| NCI | RT | Chemical_Or_Drug_Is_Metabolized_By_Enzyme/Enzyme_Metabolizes_Chemical_Or_Drug | R122 |
| NCI | RT | Chemical_Or_Drug_Plays_Role_In_Biological_Process/Biological_Process_Involves_Chemical_Or_Drug | R66 |
| NCI | RT | Chemotherapy_Regimen_Has_Component/Is_Component_Of_Chemotherapy_Regimen | R123 |
| NCI | RT | Concept_In_Subset/Subset_Includes_Concept | R48 |
| NCI | RT | Cytogenetic_Abnormality_Involves_Chromosome/Chromosome_Involved_In_Cytogenetic_Abnormality | R173 |
| NCI | RT | Disease_Excludes_Abnormal_Cell/Is_Not_Abnormal_Cell_Of_Disease | R139 |
| NCI | RT | Disease_Excludes_Cytogenetic_Abnormality/Is_Not_Cytogenetic_Abnormality_Of_Disease | R141 |
| NCI | RT | Disease_Excludes_Finding/Is_Not_Finding_Of_Disease | R142 |
| NCI | RT | Disease_Excludes_Molecular_Abnormality/Is_Not_Molecular_Abnormality_Of_Disease | R140 |
| NCI | RT | Disease_Excludes_Normal_Cell_Origin/Is_Not_Normal_Cell_Origin_Of_Disease | R138 |
| NCI | RT | Disease_Excludes_Normal_Tissue_Origin/Is_Not_Normal_Tissue_Origin_Of_Disease | R137 |
| NCI | RT | Disease_Excludes_Primary_Anatomic_Site/Is_Not_Primary_Anatomic_Site_Of_Disease | R135 |
| NCI | RT | Disease_Has_Abnormal_Cell/Is_Abnormal_Cell_Of_Disease | R105 |
| NCI | RT | Disease_Has_Associated_Anatomic_Site/Is_Associated_Anatomic_Site_Of | R100 |
| NCI | RT | Disease_Has_Associated_Disease/Is_Associated_Disease_Of | R126 |
| NCI | RT | Disease_Has_Cytogenetic_Abnormality/Is_Cytogenetic_Abnormality_Of_Disease | R107 |
| NCI | RT | Disease_Has_Finding/Is_Finding_Of_Disease | R108 |
| NCI | RT | Disease_Has_Metastatic_Anatomic_Site/Is_Metastatic_Anatomic_Site_Of_Disease | R102 |
| NCI | RT | Disease_Has_Molecular_Abnormality/Is_Molecular_Abnormality_Of_Disease | R106 |
| NCI | RT | Disease_Has_Normal_Cell_Origin/Is_Normal_Cell_Origin_Of_Disease | R104 |
| NCI | RT | Disease_Has_Normal_Tissue_Origin/Is_Normal_Tissue_Origin_Of_Disease | R103 |
| NCI | RT | Disease_Has_Primary_Anatomic_Site/Is_Primary_Anatomic_Site_Of_Disease | R101 |
| NCI | RT | Disease_Is_Grade/Is_Grade_Of_Disease | R110 |
| NCI | RT | Disease_Is_Stage/Is_Stage_Of_Disease | R88 |
| NCI | RT | Disease_Mapped_To_Chromosome/Chromosome_Mapped_To_Disease | R174 |
| NCI | RT | Disease_Mapped_To_Gene/Gene_Mapped_To_Disease | R176 |
| NCI | RT | Disease_May_Have_Abnormal_Cell/May_Be_Abnormal_Cell_Of_Disease | R113 |
| NCI | RT | Disease_May_Have_Associated_Disease/May_Be_Associated_Disease_Of_Disease | R116 |
| NCI | RT | Disease_May_Have_Cytogenetic_Abnormality/May_Be_Cytogenetic_Abnormality_Of_Disease | R114 |
| NCI | RT | Disease_May_Have_Finding/May_Be_Finding_Of_Disease | R115 |
| NCI | RT | Disease_May_Have_Molecular_Abnormality/May_Be_Molecular_Abnormality_Of_Disease | R89 |
| NCI | RT | Disease_May_Have_Normal_Cell_Origin/May_Be_Normal_Cell_Origin_Of_Disease | R112 |
| NCI | RT | EO_Disease_Has_Associated_Cell_Type/Cell_Type_Is_Associated_With_EO_Disease | R23 |
| NCI | RT | EO_Disease_Has_Associated_EO_Anatomy/EO_Anatomy_Is_Associated_With_EO_Disease | R25 |
| NCI | RT | EO_Disease_Has_Property_Or_Attribute/Is_Property_Or_Attribute_Of_EO_Disease | R26 |
| NCI | RT | EO_Disease_Maps_To_Human_Disease/Human_Disease_Map_To_EO_Disease | R24 |
| NCI | RT | Gene_Associated_With_Disease/Disease_Has_Associated_Gene | R38 |
| NCI | RT | Gene_Found_In_Organism/Organism_Has_Gene | R41 |
| NCI | RT | Gene_Has_Abnormality/Is_Abnormality_Of_Gene | R132 |
| NCI | RT | Gene_Has_Physical_Location/Is_Physical_Location_Of_Gene | R145 |
| NCI | RT | Gene_In_Chromosomal_Location/Is_Chromosomal_Location_Of_Gene | R40 |
| NCI | RT | Gene_Involved_In_Pathogenesis_Of_Disease/Pathogenesis_Of_Disease_Involves_Gene | R175 |
| NCI | RT | Gene_Is_Biomarker_Of/Disease_Is_Marked_By_Gene | R39 |
| NCI | RT | Gene_Is_Biomarker_Type/Biomarker_Type_Includes_Gene | R36 |
| NCI | RT | Gene_Is_Element_In_Pathway/Pathway_Has_Gene_Element | R130 |
| NCI | RT | Gene_Mutant_Encodes_Gene_Product_Sequence_Variation/Gene_Product_Sequence_Variation_Encoded_By_Gene_Mutant | R178 |
| NCI | RT | Gene_Plays_Role_In_Process/Process_Involves_Gene | R37 |
| NCI | RT | Gene_Product_Encoded_By_Gene/Gene_Encodes_Gene_Product | R54 |
| NCI | RT | Gene_Product_Expressed_In_Tissue/Tissue_Is_Expression_Site_Of_Gene_Product | R49 |
| NCI | RT | Gene_Product_has_Abnormality/Is_Abnormality_Of_Gene_Product | R133 |
| NCI | RT | Gene_Product_Has_Associated_Anatomy/Is_Associated_Anatomy_Of_Gene_Product | R46 |
| NCI | RT | Gene_Product_Has_Biochemical_Function/Is_Biochemical_Function_Of_Gene_Product | R52 |
| NCI | RT | Gene_Product_Has_Chemical_Classification/Is_Chemical_Classification_Of_Gene_Product | R44 |
| NCI | RT | Gene_Product_Has_Malfunction_Type/Is_Malfunction_Type_Of_Gene_Product | R43 |
| NCI | RT | Gene_Product_Has_Organism_Source/Is_Organism_Source_Of_Gene_Product | R45 |
| NCI | RT | Gene_Product_Has_Structural_Domain_Or_Motif/Is_Structural_Domain_Or_Motif_Of_Gene_Product | R50 |
| NCI | RT | Gene_Product_Is_Biomarker_Of/Is_Marked_By_Gene_Product | R47 |
| NCI | RT | Gene_Product_Is_Biomarker_Type/Biomarker_Type_Includes_Gene_Product | R42 |
| NCI | RT | Gene_Product_Is_Element_In_Pathway/Has_Gene_Product_Element | R131 |
| NCI | RT | Gene_Product_Is_Physical_Part_Of/Complex_Has_Physical_Part | R51 |
| NCI | RT | Gene_Product_Malfunction_Associated_With_Disease/Associated_With_Malfunction_Of_Gene_Product | R48 |
| NCI | RT | Gene_Product_Plays_Role_In_Biological_Process/Biological_Process_Involves_Gene_Product | R53 |
| NCI | RT | Gene_Product_Sequence_Variation_Encoded_By_Gene_Mutant/Gene_Mutant_Encodes_Gene_Product_Sequence_Variation | R179 |
| NCI | RT | Has_CDRH_Parent/Parent_Is_CDRH | A10 |
| NCI | RT | Has_NICHD_Parent/Parent_Is_NICHD | A11 |
| NCI | RT | Has_Salt_Form/Has_Free_Acid_Or_Base_Form | A5 |
| NCI | RT | Has_Target/Is_Target_Of_Agent | A7 |
| NCI | RT | Is_Related_To_Endogenous_Product/Endogenous_Product_Related_To | A9 |
| NCI | RT | Molecular_Abnormality_Involves_Gene/Gene_Involved_In_Molecular_Abnormality | R177 |
| NCI | RT | Procedure_Has_Completely_Excised_Anatomy/Completely_Excised_Anatomy_Has_Procedure | R171 |
| NCI | RT | Procedure_Has_Excised_Anatomy/Excised_Anatomy_Has_Procedure | R167 |
| NCI | RT | Procedure_Has_Imaged_Anatomy/Imaged_Anatomy_Has_Procedure | R165 |
| NCI | RT | Procedure_Has_Partially_Excised_Anatomy/Partially_Excised_Anatomy_Has_Procedure | R169 |
| NCI | RT | Procedure_Has_Target_Anatomy/Target_Anatomy_Has_Procedure | R163 |
| NCI | RT | Procedure_May_Have_Completely_Excised_Anatomy/Completely_Excised_Anatomy_May_Have_Procedure | R170 |
| NCI | RT | Procedure_May_Have_Excised_Anatomy/Excised_Anatomy_May_Have_Procedure | R166 |
| NCI | RT | Procedure_May_Have_Partially_Excised_Anatomy/Partially_Excised_Anatomy_May_Have_Procedure | R168 |
| NCI | RT | Qualifier_Applies_To/Is_Qualified_By | A4 |
| NCI | RT | Regimen_Has_Accepted_Use_For_Disease/Disease_Has_Accepted_Treatment_With_Regimen | R172 |
| NCI | RT | Role_Has_Domain/Kind_Is_Domain_Of | A1 |
| NCI | RT | Role_Has_Parent/Role_Is_Parent_Of | A3 |
| NCI | RT | Role_Has_Range/Kind_Is_Range_Of | A2 |
(1) The relationship group is generated from the 'owl:Restriction' and 'owl:intersectionOf' tag in the source data file.
Hierarchy (MRHIER)
)The hierarchy is created from the 'rdfs:subClassOfrdf:resource' tag which indicates the parent of the concept. Sibling information is not included.
Mappings (MRMAP)
)There are no mappings present.
