This page list UMLS Metathesaurus data elements and traces them back to the specific source data that populates them.
VSAB: NCI2023_03D
NCI Thesaurus (NCIt) is a widely recognized standard for biomedical coding and reference. It covers vocabulary for clinical care, translational and basic research, public information and administrative activities and is used by a broad variety of public and private partners both nationally and internationally.
New associations
Updated association names. The word 'Permissible' was changed to 'Authorized' for the following associations:
File Name | Description |
---|---|
ThesaurusInferred.owl | Complete source data in an OWL2 (by code) formatted file. |
The term names and term types are extracted from the field tagged, "<P90...<ncicp:term-name>...lt;/ncicp:term-name><ncicp:term-group>...</ncicp:term-group>...</P90>" (FULL_SYN), unless otherwise noted.
Term type | Description |
---|---|
AB | Abbreviation |
AD | Adjective |
BN | Fully-specified drug brand name that can not be prescribed |
CA2 | ISO 3166-1 standard country code in alpha-2 (two-letter) format |
CA3 | ISO 3166-1 standard country code in alpha-3 (three-letter) format |
CCN | Chemical code name |
CCS | FIPS 10-4 country code |
CSN | Chemical Structure Name |
DN | Display name |
FBD | Foreign brand name |
HD | Hierarchical descriptor |
OP | Obsolete preferred name |
PT | Preferred name; extracted from field tagged <P108 |
SY | Synonym |
For term type OP, the suppressible value is "O" (obsolete). For all others, the value is "N" (not suppressible).
For term type AB, the suppressible value is "Y".
Attribute Name | Origin: OWL tag |
---|---|
ACCEPTED_THERAPEUTIC_USE_FOR | <P302 rdf:datatype="http://www.w3.org.../P302> |
BIOCARTA_ID | <P216 rdf:datatype="http://www.w3.org.../P216> |
CAS_REGISTRY | <P210 rdf:datatype="http://www.w3.org.../P210> |
CHEBI_ID | <P368 rdf:datatype="http://www.w3.org.../P368> |
CHEMICAL_FORMULA | <P350 rdf:datatype="http://www.w3.org.../P350> |
CLINVAR_VARIATION_ID | <P400 rdf:datatype="http://www.w3.org.../P400> |
CNU | '<P90...ncicp:term-group' field = CNU |
DESIGN_NOTE | <P98 rdf:datatype="http://www.w3.org.../P98> |
ENTREZGENE_ID | <P321 rdf:datatype="http://www.w3.org.../P321> |
ESSENTIAL_AMINO_ACID | <P356 rdf:datatype="http://www.w3.org.../P356> |
ESSENTIAL_FATTY_ACID | <P357 rdf:datatype="http://www.w3.org.../P357> |
EXTENSIBLE_LIST | <P361 rdf:datatype="http://www.w3.org.../P361> |
FDA_TABLE | <P317 rdf:datatype="http://www.w3.org.../P317> |
FDA_UNII_CODE | <P319 rdf:datatype="http://www.w3.org.../P319> |
GENEBANK_ACCESSION_NUMBER | <P102 rdf:datatype="http://www.w3.org.../P102> |
GENE_ENCODES_PRODUCT | <P96 rdf:datatype="http://www.w3.org.../P96> |
GO_ANNOTATION | <P211 rdf:datatype="http://www.w3.org.../P211> |
HGNC_ID | <P369 rdf:datatype="http://www.w3.org.../P369> |
HOMOLOGOUS_GENE | <P101 rdf:datatype="http://www.w3.org.../P101> |
ICD-O-3_CODE | <P334 rdf:datatype="http://www.w3.org.../P334> |
INFOODS | <P353 rdf:datatype="http://www.w3.org.../P353> |
KEGG_ID | <P215 rdf:datatype="http://www.w3.org.../P215> |
LEXICAL_TAG | '<P90...ncicp:term-group' = FB or BR |
MACRONUTRIENT | <P360 rdf:datatype="http://www.w3.org.../P360> |
MGI_ACCESSION_ID | <P332 rdf:datatype="http://www.w3.org.../P332> |
MICRONUTRIENT | <P359 rdf:datatype="http://www.w3.org.../P359> |
MIRBASE_ID | <P362 rdf:datatype="http://www.w3.org.../P362> |
NCBI_TAXON_ID | <P331 rdf:datatype="http://www.w3.org.../P331> |
NCI_DRUG_DICTIONARY_ID | <P399 rdf:datatype="http://www.w3.org.../P399> |
NEOPLASTIC_STATUS | <P363 rdf:datatype="http://www.w3.org.../P363> |
NSC_NUMBER | <P175 rdf:datatype="http://www.w3.org.../P175> |
NUTRIENT | <P358 rdf:datatype="http://www.w3.org.../P358> |
OMIM_NUMBER | <P100 rdf:datatype="http://www.w3.org.../P100> |
PDQ_CLOSED_TRIAL_SEARCH_ID | <P330 rdf:datatype="http://www.w3.org.../P330> |
PDQ_OPEN_TRIAL_SEARCH_ID | <P329 rdf:datatype="http://www.w3.org.../P329> |
PID_ID | <P367 rdf:datatype="http://www.w3.org.../P367> |
PUBLISH_VALUE_SET | <P372 rdf:datatype="http://www.w3.org.../P372> |
PUBMEDID_PRIMARY_REFERENCE | <P171 rdf:datatype="http://www.w3.org.../P171> |
SWISS_PROT | <P93 rdf:datatype="http://www.w3.org.../P93> |
TERM_BROWSER_VALUE_SET_DESCRIPTION | <P376 rdf:datatype="http://www.w3.org.../P376> |
TOLERABLE_LEVEL | <P352 rdf:datatype="http://www.w3.org.../P352> |
UNIT | <P355 rdf:datatype="http://www.w3.org.../P355> |
USDA_ID | <P354 rdf:datatype="http://www.w3.org.../P354> |
USE_FOR | <P333 rdf:datatype="http://www.w3.org.../P333> |
US_RECOMMENDED_INTAKE | <P351 rdf:datatype="http://www.w3.org.../P351> |
VALUE_SET_PAIR | <P398 rdf:datatype="http://www.w3.org.../P398> |
Definition: <P97...ncicp:complexDefinition xmlns:ncicp.../P97>
Alt_Definition: <P325...ncicp:complexDefinition xmlns:ncicp.../P325>
Origin of the relationship is derived from the "owl:onPropertyrdf..." code (Roles) and/or the "<A# rdf..." code (Associations). For example:
<rdfs:subClassOf></rdfs:subClassOf>
<A1 rdf:resource="http://...owl#A..."/>
Relationship | Relationship Label/inverse Relationship Label | Origin |
---|---|---|
NT | conceptual_part_of/has_conceptual_part | R27 |
RT | allele_absent_from_wild-type_cromosomal_location/chromosomal_location_of_wild-type_gene | R156 |
RT | allele_has_abnormality/abnormality_associated_with_allele | R153 |
RT | allele_has_activity/activity_of_allele | R159 |
RT | allele_in_chromosomal_location/chromosomal_location_of_allele | R155 |
RT | allele_plays_altered_role_in_process/process_altered_by_allele | R158 |
RT | allele_plays_role_in_metabolism_of_chemical_or_drug/chemical_or_drug_metabolism_is_associated_with_allele | R160 |
RT | anatomic_structure_has_location/is_location_of_anatomic_structure | R81 |
RT | anatomic_structure_is_physical_part_of/has_physical_part_of_anatomic_structure | R82 |
RT | biological_process_has_associated_location/is_location_of_biological_process | R30 |
RT | biological_process_has_initiator_chemical_or_drug/chemical_or_drug_initiates_biological_process | R32 |
RT | biological_process_has_initiator_process/process_initiates_biological_process | R28 |
RT | biological_process_has_result_anatomy/anatomy_originated_from_biological_process | R31 |
RT | biological_process_has_result_biological_process/biological_process_results_from_biological_process | R34 |
RT | biological_process_has_result_chemical_or_drug/chemical_or_drug_is_product_of_biological_process | R29 |
RT | biological_process_is_part_of_process/process_includes_biological_process | R35 |
RT | chemical_or_drug_affects_abnormal_cell/abnormal_cell_affected_by_chemical_or_drug | R150 |
RT | chemical_or_drug_affects_cell_type_or_tissue/cell_type_or_tissue_affected_by_chemical_or_drug | R72 |
RT | chemical_or_drug_affects_gene_product/gene_product_affected_by_chemical_or_drug | R146 |
RT | chemical_or_drug_has_mechanism_of_action/is_mechanism_of_action_of_chemical_or_drug | R124 |
RT | chemical_or_drug_has_physiologic_effect/is_physiologic_effect_of_chemical_or_drug | R125 |
RT | chemical_or_drug_is_metabolized_by_enzyme/enzyme_metabolizes_chemical_or_drug | R122 |
RT | chemical_or_drug_plays_role_in_biological_process/biological_process_involves_chemical_or_drug | R66 |
RT | chemotherapy_regimen_has_component/is_component_of_chemotherapy_regimen | R123 |
RT | concept_in_subset/subset_includes_concept | R48 |
RT | cytogenetic_abnormality_involves_chromosome/chromosome_involved_in_cytogenetic_abnormality | R173 |
RT | disease_excludes_abnormal_cell/is_not_abnormal_cell_of_disease | R139 |
RT | disease_excludes_cytogenetic_abnormality/is_not_cytogenetic_abnormality_of_disease | R141 |
RT | disease_excludes_finding/is_not_finding_of_disease | R142 |
RT | disease_excludes_metastatic_anatomic_site | R136 |
RT | disease_excludes_molecular_abnormality/is_not_molecular_abnormality_of_disease | R140 |
RT | disease_excludes_normal_cell_origin/is_not_normal_cell_origin_of_disease | R138 |
RT | disease_excludes_normal_tissue_origin/is_not_normal_tissue_origin_of_disease | R137 |
RT | disease_excludes_primary_anatomic_site/is_not_primary_anatomic_site_of_disease | R135 |
RT | disease_has_abnormal_cell/is_abnormal_cell_of_disease | R105 |
RT | disease_has_associated_anatomic_site/is_associated_anatomic_site_of | R100 |
RT | disease_has_associated_disease/is_associated_disease_of | R126 |
RT | disease_has_cytogenetic_abnormality/is_cytogenetic_abnormality_of_disease | R107 |
RT | disease_has_finding/is_finding_of_disease | R108 |
RT | disease_has_metastatic_anatomic_site/is_metastatic_anatomic_site_of_disease | R102 |
RT | disease_has_molecular_abnormality/is_molecular_abnormality_of_disease | R106 |
RT | disease_has_normal_cell_origin/is_normal_cell_origin_of_disease | R104 |
RT | disease_has_normal_tissue_origin/is_normal_tissue_origin_of_disease | R103 |
RT | disease_has_primary_anatomic_site/is_primary_anatomic_site_of_disease | R101 |
RT | disease_is_grade/is_grade_of_disease | R110 |
RT | disease_is_stage/is_stage_of_disease | R88 |
RT | disease_mapped_to_chromosome/chromosome_mapped_to_disease | R174 |
RT | disease_mapped_to_gene/gene_mapped_to_disease | R176 |
RT | disease_may_have_abnormal_cell/may_be_abnormal_cell_of_disease | R113 |
RT | disease_may_have_associated_disease/may_be_associated_disease_of_disease | R116 |
RT | disease_may_have_cytogenetic_abnormality/may_be_cytogenetic_abnormality_of_disease | R114 |
RT | disease_may_have_finding/may_be_finding_of_disease | R115 |
RT | disease_may_have_molecular_abnormality/may_be_molecular_abnormality_of_disease | R89 |
RT | disease_may_have_normal_cell_origin/may_be_normal_cell_origin_of_disease | R112 |
RT | disease_may_have_normal_cell_origin/may_be_normal_cell_origin_of_disease | R112 |
RT | eo_disease_has_associated_cell_type/cell_type_is_associated_with_eo_disease | R23 |
RT | eo_disease_has_associated_eo_anatomy/eo_anatomy_is_associated_with_eo_disease | R25 |
RT | eo_disease_has_property_or_attribute/is_property_or_attribute_of_eo_disease | R26 |
RT | eo_disease_maps_to_human_disease/human_disease_map_to_eo_disease | R24 |
RT | gene_associated_with_disease/disease_has_associated_gene | R38 |
RT | gene_found_in_organism/organism_has_gene | R41 |
RT | gene_has_abnormality/is_abnormality_of_gene | R132 |
RT | gene_has_physical_location/is_physical_location_of_gene | R145 |
RT | gene_in_chromosomal_location/is_chromosomal_location_of_gene | R40 |
RT | gene_involved_in_pathogenesis_of_disease/pathogenesis_of_disease_involves_gene | R175 |
RT | gene_is_biomarker_of/disease_is_marked_by_gene | R39 |
RT | gene_is_biomarker_type/biomarker_type_includes_gene | R36 |
RT | gene_is_element_in_pathway/pathway_has_gene_element | R130 |
RT | gene_mutant_encodes_gene_product_sequence_variation/gene_product_sequence_variation_encoded_by_gene_mutant | R178 |
RT | gene_plays_role_in_process/process_involves_gene | R37 |
RT | gene_product_encoded_by_gene/gene_encodes_gene_product | R54 |
RT | gene_product_expressed_in_tissue/tissue_is_expression_site_of_gene_product | R49 |
RT | gene_product_has_abnormality/is_abnormality_of_gene_product | R133 |
RT | gene_product_has_associated_anatomy/is_associated_anatomy_of_gene_product | R46 |
RT | gene_product_has_biochemical_function/is_biochemical_function_of_gene_product | R52 |
RT | gene_product_has_chemical_classification/is_chemical_classification_of_gene_product | R44 |
RT | gene_product_has_organism_source/is_organism_source_of_gene_product | R45 |
RT | gene_product_has_structural_domain_or_motif/is_structural_domain_or_motif_of_gene_product | R50 |
RT | gene_product_is_biomarker_of/is_marked_by_gene_product | R47 |
RT | gene_product_is_biomarker_type/biomarker_type_includes_gene_product | R42 |
RT | gene_product_is_element_in_pathway/has_gene_product_element | R131 |
RT | gene_product_is_physical_part_of/complex_has_physical_part | R51 |
RT | gene_product_malfunction_associated_with_disease/associated_with_malfunction_of_gene_product | R48 |
RT | gene_product_plays_role_in_biological_process/biological_process_involves_gene_product | R53 |
RT | gene_product_sequence_variation_encoded_by_gene_mutant/gene_mutant_encodes_gene_product_sequence_variation | R179 |
RT | gene_product_variant_of_gene_product/gene_product_has_gene_product_variant | R182 |
RT | has_cdrh_parent/cdrh_parent_of | A10 |
RT | has_ctcae_5_parent/ctcae_5_parent_of | A15 |
RT | has_ctdc_value/is_ctdc_value_of | A27 |
RT | has_data_element/data_element_of | A12 |
RT | has_dipg_dmg_permissible_value/is_dipg_dmg_permissible_value_for_variable | A40 |
RT | has_gdc_value/is_value_for_gdc_property | A31 |
RT | has_icdc_value/icdc_value_of | A30 |
RT | has_inc_parent/inc_parent_of | A16 |
RT | has_nichd_parent/nichd_parent_of | A11 |
RT | has_pcdc_all_permissible_value/is_pcdc_all_permissible_value_for_variable | A36 |
RT | has_pcdc_aml_permissible_value/is_pcdc_aml_permissible_value_for_variable | A26 |
RT | has_pcdc_hl_permissible_value/is_pcdc_hl_permissible_value_for_variable | A39 |
RT | has_pcdc_ews_permissible_value/is_pcdc_ews_permissible_value_for_variable | A29 |
RT | has_pcdc_gct_permissible_value/is_pcdc_gct_permissible_value_for_variable | A34 |
RT | has_pcdc_os_permissible_value/is_pcdc_os_permissible_value_for_variable | A38 |
RT | has_pcdc_data_type/pcdc_data_type_of | A23 |
RT | has_pharmaceutical_basic_administrable_dose_form/pharmaceutical_basic_administrable_dose_form_of | A41 |
RT | has_salt_form/has_free_acid_or_base_form | A5 |
RT | has_seronet_permissible_value/is_seronet_permissible_value_for_variable | A37 |
RT | has_target/is_target_of_agent | A7 |
RT | is_pcdc_all_permissible_value_for_variable/has_pcdc_all_permissible_value | A35 |
RT | is_pcdc_aml_permissible_value_for_variable/has_pcdc_aml_permissible_value | A24 |
RT | is_pcdc_ews_permissible_value_for_variable/has_pcdc_ews_permissible_value | A28 |
RT | is_pcdc_gct_permissible_value_for_variable/has_pcdc_gtc_permissible_value | A33 |
RT | is_related_To_endogenous_product/endogenous_product_related_to | A9 |
RT | is_value_for_gdc_property/has_gdc_value | A32 |
RT | molecular_abnormality_involves_gene/gene_involved_in_molecular_abnormality | R177 |
RT | neoplasm_has_special_category/special_category_includes_neoplasm | A14 |
RT | pharmaceutical_state_of_matter_of/has_pharmaceutical_state_of_matter | A17 |
RT | pharmaceutical_basic_dose_form_of/has_pharmaceutical_basic_dose_form | A18 |
RT | pharmaceutical_administration_method_of/has_pharmaceutical_administration_method | A19 |
RT | pharmaceutical_intended_site_of/has_pharmaceutical_intended_site | A20 |
RT | pharmaceutical_release_characteristics_of/has_pharmaceutical_release_characteristics | A21 |
RT | pharmaceutical_transformation_of/has_pharmaceutical_transformation | A22 |
RT | procedure_has_completely_excised_anatomy/completely_excised_anatomy_has_procedure | R171 |
RT | procedure_has_excised_anatomy/excised_anatomy_has_procedure | R167 |
RT | procedure_has_imaged_anatomy/imaged_anatomy_has_procedure | R165 |
RT | procedure_has_partially_excised_anatomy/partially_excised_anatomy_has_procedure | R169 |
RT | procedure_has_target_anatomy/target_anatomy_has_procedure | R163 |
RT | procedure_may_have_completely_excised_anatomy/completely_excised_anatomy_may_have_procedure | R170 |
RT | procedure_may_have_excised_anatomy/excised_anatomy_may_have_procedure | R166 |
RT | procedure_may_have_partially_excised_anatomy/partially_excised_anatomy_may_have_procedure | R168 |
RT | qualifier_applies_to/is_qualified_by | A4 |
RT | regimen_has_accepted_use_for_disease/disease_has_accepted_treatment_with_regimen | R172 |
RT | related_to_genetic_biomarker/genetic_biomarker_related_to | A13 |
RT | role_has_domain/kind_is_domain_of | A1 |
RT | role_has_parent/role_is_parent_of | A3 |
RT | role_has_range/kind_is_range_of | A2 |
SY | tradename_of/has_tradename | Brand names and generic names are not considered synonyms in NCI, so a relationship is created to link the two concepts. This data is added during Metathesaurus source processing. |
RT | value_set_is_paired_with/is_paired_with_value_set | A25 |
(1) The relationship group is generated from the 'owl:Restriction' and 'owl:intersectionOf' tag in the source data file.
The hierarchy is created from the 'rdfs:subClassOfrdf:resource' tag which indicates the parent of the concept. Sibling information is not included.
No mappings are supplied by NCI.