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Unified Medical Language System® (UMLS®)

2013AB UMLS NCI Thesaurus Source Information

This page lists UMLS Metathesaurus data elements and traces them back to the specific source data that populates them.

Skip to: Atoms, Attributes, Definitions, Relationships, Mappings

VSAB: NCI2013_03D

Summary of Changes

New term type (TTY):

  • CTEP-SDCPT
  • CTEP-SDCSY
New attribute name (ATN): HGNC_ID

New relationship attributes (RELA): has_data_element|data_element_of

Dropped relationship attribute (RELA):

  • allele_associated_with_disease
  • allele_not_associated_with_disease
  • gene_product_has_malfunction_type

Original Files:

File NameDescription
ThesaurusInferred.owlComplete source data in an OWL By Code formatted file.
NCI2013_13.03d.txtConfiguration file.

Identifiers

  • CODE: NCI code (e.g., C191)
  • SAUI: Not applicable
  • SCUI: NCI code (e.g., C191)
  • SDUI: Not applicable
 

Atoms (MRCONSO)

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Term types are created by combining the root source name with the term type. For example, the source UCUM (Unified Code for Units of Measure) with a term type of PT will be represented as 'UCUMPT'. If there is no source name as a prefix to the term type (e.g., AB) then the source is presumed to be 'NCI'.

The source names and term types are extracted from the field tagged, '<P90...<ncicp:term-name>...lt;/ncicp:term-name><ncicp:term-group>...</ncicp:term-group>...</P90>' (FULL_SYN).

Term TypeDescription
ABAbbreviation
ADAdjective
BioCPTBioCarta online maps of molecular pathways, adapted for NCI, preferred name
BioCSYBioCarta online maps of molecular pathways, adapted for NCI, synonym
BNFully-specified drug brand name that can not be prescribed
BRIDGPTBiomedical Research Integrated Domain Group Model preferred name
CA2ISO 3166-1 standard country code in alpha-2 (two-letter) format
CA3ISO 3166-1 standard country code in alpha-3 (three-letter) format
CCNChemical code name
CCSFIPS 10-4 country code
CDCPTU.S. Centers for Disease Control and Prevention preferred name
CDISCPTClinical Data Interchange Standards Consortium preferred name
CDISCSYClinical Data Interchange Standards Consortium synonym
CRCHPTCancer Research Center of Hawaii preferred name
CRCHSYCancer Research Center of Hawaii synonym
CSNChemical Structure Name
CTCAEPTCommon Terminology Criteria for Adverse Events preferred name
CTEP-SDCPTCancer Therapy Evaluation Program - Simple Disease Classification preferred name
CTEP-SDCPTCancer Therapy Evaluation Program - Simple Disease Classification synonym
DCPPTNCI Division of Cancer Prevention Program preferred name
DCPSYNCI Division of Cancer Prevention Program synonym
DICOMPTDigital Imaging Communications in Medicine preferred name
DNDisplay name
DTPPTNCI Developmental Therapeutics Program preferred name
DTPSYNCI Developmental Therapeutics Program synonym
FBDForeign brand name
FDAABU.S. Food and Drug Administration abbreviation
FDAPTU.S. Food and Drug Administration preferred name
FDASYU.S. Food and Drug Administration synonym
HDHierarchical descriptor
ICHABInternational Conference on Harmonization abbreviation
ICHPTInternational Conference on Harmonization preferred name
ICHSYInternational Conference on Harmonization synonym
JAXPTJackson Laboratories Mouse Terminology, adapted for NCI use, preferred name
JAXSYJackson Laboratories Mouse Terminology, adapted for NCI use, synonym
KEGGABKyoto Encyclopedia of Genes and Genomes (KEGG), KEGG Pathway Database, adapted for NCI use, abbreviation
KEGGPTKyoto Encyclopedia of Genes and Genomes (KEGG), KEGG Pathway Database, adapted for NCI use, preferred name
KEGGSYKyoto Encyclopedia of Genes and Genomes (KEGG), KEGG Pathway Database, adapted for NCI use, synonym
NCI-GLOSSOPNCI Dictionary of Cancer Terms obsolete preferred name
NCI-GLOSSPTNCI Dictionary of Cancer Terms preferred name
NCI-GLOSSSYNCI Dictionary of Cancer Terms synonym
NCI-HL7ABNCI Health Level 7 abbreviation
NCI-HL7PTNCI Health Level 7 preferred name
NCI-HL7SYNCI Health Level 7 synonym
NCPDPPTNational Council for Prescription Drug Programs preferred name
NICHDABNational Institute of Child Health and Human Development abbreviation
NICHDPTNational Institute of Child Health and Human Development preferred name
NICHDSYNational Institute of Child Health and Human Development synonym
OPObsolete preferred name
PIDPTNational Cancer Institute Nature Pathway Interaction Database preferred name
PTPreferred name
RENIDNRegistry Nomenclature Information display name
SYSynonym
UCUMABUnified Code for Units of Measure abbreviation
UCUMPTUnified Code for Units of Measure preferred name
UCUMSYUnified Code for Units of Measure synonym
ZFINPTZebrafish Model Organism Database preferred name
ZFINSYZebrafish Model Organism Database synonym

Suppressibility

For term types CCN and CCS, the suppressibility value is 'Y' (suppressible). For term type OP, the value is 'O' (obsolete). For all others, the value is 'N' (not suppressible).

 

Attributes (MRSAT)

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Attribute NameOrigin: OWL tag
ACCEPTED_THERAPEUTIC_USE_FOR <P302 rdf:datatype="http://www.w3.org.../P302>
BIOCARTA_ID <P216 rdf:datatype="http://www.w3.org.../P216>
CAS_REGISTRY <P210 rdf:datatype="http://www.w3.org.../P210>
CHEBI_ID <P368 rdf:datatype="http://www.w3.org.../P368>
CHEMICAL_FORMULA <P350 rdf:datatype="http://www.w3.org.../P350>
CNU '<P90...ncicp:term-group' field = CNU
CONTRIBUTING_SOURCE <P322 rdf:datatype="http://www.w3.org.../P322>
DESIGN_NOTE <P98 rdf:datatype="http://www.w3.org.../P98>
ENTREZGENE_ID <P321 rdf:datatype="http://www.w3.org.../P321>
ESSENTIAL_AMINO_ACID <P356 rdf:datatype="http://www.w3.org.../P356>
ESSENTIAL_FATTY_ACID <P357 rdf:datatype="http://www.w3.org.../P357>
EXTENSIBLE_LIST <P361 rdf:datatype="http://www.w3.org.../P361>
FDA_TABLE <P317 rdf:datatype="http://www.w3.org.../P317>
FDA_UNII_CODE <P319 rdf:datatype="http://www.w3.org.../P319>
GENEBANK_ACCESSION_NUMBER <P102 rdf:datatype="http://www.w3.org.../P102>
GENE_ENCODES_PRODUCT <P96 rdf:datatype="http://www.w3.org.../P96>
GO_ANNOTATION <P211 rdf:datatype="http://www.w3.org.../P211>
HGNC_ID <P369 rdf:datatype="http://www.w3.org.../P369>
HOMOLOGOUS_GENE <P101 rdf:datatype="http://www.w3.org.../P101>
ICD-O-3_CODE <P334 rdf:datatype="http://www.w3.org.../P334>
INFOODS <P353 rdf:datatype="http://www.w3.org.../P353>
KEGG_ID <P215 rdf:datatype="http://www.w3.org.../P215>
LEXICAL_TAG '<P90...ncicp:term-group' = FB or BR
MACRONUTRIENT <P360 rdf:datatype="http://www.w3.org.../P360>
MGI_ACCESSION_ID <P332 rdf:datatype="http://www.w3.org.../P332>
MICRONUTRIENT <P359 rdf:datatype="http://www.w3.org.../P359>
MIRBASE_ID <P362 rdf:datatype="http://www.w3.org.../P362>
NCBI_TAXON_ID <P331 rdf:datatype="http://www.w3.org.../P331>
NEOPLASTIC_STATUS <P363 rdf:datatype="http://www.w3.org.../P363>
NSC_CODE <P175 rdf:datatype="http://www.w3.org.../P175>
NUTRIENT <P358 rdf:datatype="http://www.w3.org.../P358>
OMIM_NUMBER <P100 rdf:datatype="http://www.w3.org.../P100>
ORIG_CODE '<P90...ncicp:source_code' field when the SAB is not NCI
PDQ_CLOSED_TRIAL_SEARCH_ID <P330 rdf:datatype="http://www.w3.org.../P330>
PDQ_OPEN_TRIAL_SEARCH_ID <P329 rdf:datatype="http://www.w3.org.../P329>
PID_ID <P367 rdf:datatype="http://www.w3.org.../P367>
PUBMEDID_PRIMARY_REFERENCE <P171 rdf:datatype="http://www.w3.org.../P171>
SUBSOURCE <P92 rdf:datatype="http://www.w3.org.../P92>
SWISS_PROT <P93 rdf:datatype="http://www.w3.org.../P93>
TOLERABLE_LEVEL <P352 rdf:datatype="http://www.w3.org.../P352>
UNIT <P355 rdf:datatype="http://www.w3.org.../P355>
USDA_ID <P354 rdf:datatype="http://www.w3.org.../P354>
USE_FOR <P333 rdf:datatype="http://www.w3.org.../P333>
US_RECOMMENDED_INTAKE <P351 rdf:datatype="http://www.w3.org.../P351>
 

Definitions (MRDEF)

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Only definitions with a source of NCI, NCI-GLOSS, or of an NCI subsource are included. Definitions are attached to their corresponding PT. For example, an NCI-GLOSS definition is attached to its NCI-GLOSS/PT. If there is no corresponding PT then the definition is attached to the NCI/PT. Definition attributions are enclosed within parentheses and appended to the definition.

Origin:

Definition: <P97...ncicp:ComplexDefinition xmlns:ncicp.../P97>

Alt_Definition: <P325...ncicp:ComplexDefinition xmlns:ncicp.../P325>
 

Relationships (MRREL)

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Origin of the relationship is derived from the "owl:onPropertyrdf..." code (Roles) and/or the "<A# rdf..." code (Associations). For example:

<rdfs:subClassOf>
   <owl:Restriction>
      <owl:onPropertyrdf:resource="#R.."/>
      <owl:someValuesFromrdf:resource="#C.."/>
   </owl:Restriction>

</rdfs:subClassOf>

<A1 rdf:resource="http://...owl#C..."/>

SourceRelationshipRelationship Label/Inverse Relationship LabelOrigin
NCINT Conceptual_Part_Of/Has_Conceptual_PartR27
NCIRT Allele_Absent_From_Wild-type_Chromosomal_Location/Chromosomal_Location_of_Wild-type_GeneR156
NCIRT Allele_Has_Abnormality/Abnormality_Associated_With_AlleleR153
NCIRT Allele_Has_Activity/Activity_Of_AlleleR159
NCIRT Allele_In_Chromosomal_Location/Chromosomal_Location_Of_AlleleR155
NCIRT Allele_Plays_Altered_Role_In_Process/Process_Altered_By_AlleleR158
NCIRT Allele_Plays_Role_In_Metabolism_Of_Chemical_Or_Drug/Chemical_Or_Drug_Metabolism_Is_Associated_With_AlleleR160
NCIRT Anatomic_Structure_Has_Location/Is_Location_Of_Anatomic_StructureR81
NCIRT Anatomic_Structure_Is_Physical_Part_Of/Has_Physical_Part_Of_Anatomic_StructureR82
NCIRT Biological_Process_Has_Associated_Location/Is_Location_Of_Biological_ProcessR30
NCIRT Biological_Process_Has_Initiator_Chemical_Or_Drug/Chemical_Or_Drug_Initiates_Biological_ProcessR32
NCIRT Biological_Process_Has_Initiator_Process/Process_Initiates_Biological_ProcessR28
NCIRT Biological_Process_Has_Result_AnatomyAnatomy_Originated_From_Biological_ProcessR31
NCIRT Biological_Process_Has_Result_Biological_Process/Biological_Process_Results_From_Biological_ProcessR34
NCIRT Biological_Process_Has_Result_Chemical_Or_Drug/Chemical_Or_Drug_Is_Product_Of_Biological_ProcessR29
NCIRT Biological_Process_Is_Part_Of_Process/Process_Includes_Biological_ProcessR35
NCIRT Chemical_Or_Drug_Affects_Abnormal_Cell/Abnormal_Cell_Affected_By_Chemical_Or_DrugR150
NCIRT Chemical_Or_Drug_Affects_Cell_Type_Or_Tissue/Cell_Type_Or_Tissue_Affected_By_Chemical_Or_DrugR72
NCIRT Chemical_Or_Drug_Affects_Gene_Product/Gene_Product_Affected_By_Chemical_Or_DrugR146
NCIRT Chemical_Or_Drug_Has_Mechanism_Of_Action/Is_Mechanism_Of_Action_Of_Chemical_Or_DrugR124
NCIRT Chemical_Or_Drug_Has_Physiologic_Effect/Is_Physiologic_Effect_Of_Chemical_Or_DrugR125
NCIRT Chemical_Or_Drug_Is_Metabolized_By_Enzyme/Enzyme_Metabolizes_Chemical_Or_DrugR122
NCIRT Chemical_Or_Drug_Plays_Role_In_Biological_Process/Biological_Process_Involves_Chemical_Or_DrugR66
NCIRT Chemotherapy_Regimen_Has_Component/Is_Component_Of_Chemotherapy_RegimenR123
NCIRT Concept_In_Subset/Subset_Includes_ConceptR48
NCIRT Cytogenetic_Abnormality_Involves_Chromosome/Chromosome_Involved_In_Cytogenetic_AbnormalityR173
NCIRT Disease_Excludes_Abnormal_Cell/Is_Not_Abnormal_Cell_Of_DiseaseR139
NCIRT Disease_Excludes_Cytogenetic_Abnormality/Is_Not_Cytogenetic_Abnormality_Of_DiseaseR141
NCIRT Disease_Excludes_Finding/Is_Not_Finding_Of_DiseaseR142
NCIRT Disease_Excludes_Molecular_Abnormality/Is_Not_Molecular_Abnormality_Of_DiseaseR140
NCIRT Disease_Excludes_Normal_Cell_Origin/Is_Not_Normal_Cell_Origin_Of_DiseaseR138
NCIRT Disease_Excludes_Normal_Tissue_Origin/Is_Not_Normal_Tissue_Origin_Of_DiseaseR137
NCIRT Disease_Excludes_Primary_Anatomic_Site/Is_Not_Primary_Anatomic_Site_Of_DiseaseR135
NCIRT Disease_Has_Abnormal_Cell/Is_Abnormal_Cell_Of_DiseaseR105
NCIRT Disease_Has_Associated_Anatomic_Site/Is_Associated_Anatomic_Site_OfR100
NCIRT Disease_Has_Associated_Disease/Is_Associated_Disease_OfR126
NCIRT Disease_Has_Cytogenetic_Abnormality/Is_Cytogenetic_Abnormality_Of_DiseaseR107
NCIRT Disease_Has_Finding/Is_Finding_Of_DiseaseR108
NCIRT Disease_Has_Metastatic_Anatomic_Site/Is_Metastatic_Anatomic_Site_Of_DiseaseR102
NCIRT Disease_Has_Molecular_Abnormality/Is_Molecular_Abnormality_Of_DiseaseR106
NCIRT Disease_Has_Normal_Cell_Origin/Is_Normal_Cell_Origin_Of_DiseaseR104
NCIRT Disease_Has_Normal_Tissue_Origin/Is_Normal_Tissue_Origin_Of_DiseaseR103
NCIRT Disease_Has_Primary_Anatomic_Site/Is_Primary_Anatomic_Site_Of_DiseaseR101
NCIRT Disease_Is_Grade/Is_Grade_Of_DiseaseR110
NCIRT Disease_Is_Stage/Is_Stage_Of_DiseaseR88
NCIRT Disease_Mapped_To_Chromosome/Chromosome_Mapped_To_DiseaseR174
NCIRT Disease_Mapped_To_Gene/Gene_Mapped_To_DiseaseR176
NCIRT Disease_May_Have_Abnormal_Cell/May_Be_Abnormal_Cell_Of_DiseaseR113
NCIRT Disease_May_Have_Associated_Disease/May_Be_Associated_Disease_Of_DiseaseR116
NCIRT Disease_May_Have_Cytogenetic_Abnormality/May_Be_Cytogenetic_Abnormality_Of_DiseaseR114
NCIRT Disease_May_Have_Finding/May_Be_Finding_Of_DiseaseR115
NCIRT Disease_May_Have_Molecular_Abnormality/May_Be_Molecular_Abnormality_Of_DiseaseR89
NCIRT Disease_May_Have_Normal_Cell_Origin/May_Be_Normal_Cell_Origin_Of_DiseaseR112
NCIRT EO_Disease_Has_Associated_Cell_Type/Cell_Type_Is_Associated_With_EO_DiseaseR23
NCIRT EO_Disease_Has_Associated_EO_Anatomy/EO_Anatomy_Is_Associated_With_EO_DiseaseR25
NCIRT EO_Disease_Has_Property_Or_Attribute/Is_Property_Or_Attribute_Of_EO_DiseaseR26
NCIRT EO_Disease_Maps_To_Human_Disease/Human_Disease_Map_To_EO_DiseaseR24
NCIRT Gene_Associated_With_Disease/Disease_Has_Associated_GeneR38
NCIRT Gene_Found_In_Organism/Organism_Has_GeneR41
NCIRT Gene_Has_Abnormality/Is_Abnormality_Of_GeneR132
NCIRT Gene_Has_Physical_Location/Is_Physical_Location_Of_GeneR145
NCIRT Gene_In_Chromosomal_Location/Is_Chromosomal_Location_Of_GeneR40
NCIRT Gene_Involved_In_Pathogenesis_Of_Disease/Pathogenesis_Of_Disease_Involves_GeneR175
NCIRT Gene_Is_Biomarker_Of/Disease_Is_Marked_By_GeneR39
NCIRT Gene_Is_Biomarker_Type/Biomarker_Type_Includes_GeneR36
NCIRT Gene_Is_Element_In_Pathway/Pathway_Has_Gene_ElementR130
NCIRT Gene_Mutant_Encodes_Gene_Product_Sequence_Variation/Gene_Product_Sequence_Variation_Encoded_By_Gene_MutantR178
NCIRT Gene_Plays_Role_In_Process/Process_Involves_GeneR37
NCIRT Gene_Product_Encoded_By_Gene/Gene_Encodes_Gene_ProductR54
NCIRT Gene_Product_Expressed_In_Tissue/Tissue_Is_Expression_Site_Of_Gene_ProductR49
NCIRT Gene_Product_has_Abnormality/Is_Abnormality_Of_Gene_ProductR133
NCIRT Gene_Product_Has_Associated_Anatomy/Is_Associated_Anatomy_Of_Gene_ProductR46
NCIRT Gene_Product_Has_Biochemical_Function/Is_Biochemical_Function_Of_Gene_ProductR52
NCIRT Gene_Product_Has_Chemical_Classification/Is_Chemical_Classification_Of_Gene_ProductR44
NCIRT Gene_Product_Has_Organism_Source/Is_Organism_Source_Of_Gene_ProductR45
NCIRT Gene_Product_Has_Structural_Domain_Or_Motif/Is_Structural_Domain_Or_Motif_Of_Gene_ProductR50
NCIRT Gene_Product_Is_Biomarker_Of/Is_Marked_By_Gene_ProductR47
NCIRT Gene_Product_Is_Biomarker_Type/Biomarker_Type_Includes_Gene_ProductR42
NCIRT Gene_Product_Is_Element_In_Pathway/Has_Gene_Product_ElementR131
NCIRT Gene_Product_Is_Physical_Part_Of/Complex_Has_Physical_PartR51
NCIRT Gene_Product_Malfunction_Associated_With_Disease/Associated_With_Malfunction_Of_Gene_ProductR48
NCIRT Gene_Product_Plays_Role_In_Biological_Process/Biological_Process_Involves_Gene_ProductR53
NCIRT Gene_Product_Sequence_Variation_Encoded_By_Gene_Mutant/Gene_Mutant_Encodes_Gene_Product_Sequence_VariationR179
NCIRT Has_CDRH_Parent/Parent_Is_CDRHA10
NCIRT Has_Data_Element/Data_Element_OfA12
NCIRT Has_NICHD_Parent/Parent_Is_NICHDA11
NCIRT Has_Salt_Form/Has_Free_Acid_Or_Base_FormA5
NCIRT Has_Target/Is_Target_Of_AgentA7
NCIRT Is_Related_To_Endogenous_Product/Endogenous_Product_Related_ToA9
NCIRT Molecular_Abnormality_Involves_Gene/Gene_Involved_In_Molecular_AbnormalityR177
NCIRT Procedure_Has_Completely_Excised_Anatomy/Completely_Excised_Anatomy_Has_ProcedureR171
NCIRT Procedure_Has_Excised_Anatomy/Excised_Anatomy_Has_ProcedureR167
NCIRT Procedure_Has_Imaged_Anatomy/Imaged_Anatomy_Has_ProcedureR165
NCIRT Procedure_Has_Partially_Excised_Anatomy/Partially_Excised_Anatomy_Has_ProcedureR169
NCIRT Procedure_Has_Target_Anatomy/Target_Anatomy_Has_ProcedureR163
NCIRT Procedure_May_Have_Completely_Excised_Anatomy/Completely_Excised_Anatomy_May_Have_ProcedureR170
NCIRT Procedure_May_Have_Excised_Anatomy/Excised_Anatomy_May_Have_ProcedureR166
NCIRT Procedure_May_Have_Partially_Excised_Anatomy/Partially_Excised_Anatomy_May_Have_ProcedureR168
NCIRT Qualifier_Applies_To/Is_Qualified_ByA4
NCIRT Regimen_Has_Accepted_Use_For_Disease/Disease_Has_Accepted_Treatment_With_RegimenR172
NCIRT Role_Has_Domain/Kind_Is_Domain_OfA1
NCIRT Role_Has_Parent/Role_Is_Parent_OfA3
NCIRT Role_Has_Range/Kind_Is_Range_OfA2
NCISY tradename_of/has_tradenameMetathesaurus created relationship

(1) The relationship group is generated from the 'owl:Restriction' and 'owl:intersectionOf' tag in the source data file.

Hierarchy (MRHIER)

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The hierarchy is created from the 'rdfs:subClassOfrdf:resource' tag which indicates the parent of the concept. Sibling information is not included.

Mappings (MRMAP)

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There are no mappings present.