Unified Medical Language System® (UMLS®)
2011AA Foundational Model of Anatomy Source Information
Notes
Summary of Changes:
)FMA3_1 inlcudes the following new data types:
IS (suppressible = "O")
OP (suppressible = "O")
OP (suppressible = "O")
RELAs:
articulates_with
adheres_to/has_adherent
has_part/part_of
Hierarchical RELA (previously null):adheres_to/has_adherent
has_part/part_of
isa
AAL_TERM
ANATOMICAL_COORDINATE (replaces COORDINATE)
FREESURFER_TERM
NEUROLEX_ID
RADLEX_ID
TALAIRACH
TALAIRACH_ID
ANATOMICAL_COORDINATE (replaces COORDINATE)
FREESURFER_TERM
NEUROLEX_ID
RADLEX_ID
TALAIRACH
TALAIRACH_ID
RELAs:
has_homonym/homonym_for
Attributes:COORDINATE
The following RELAs were updated due to a spelling error. This
correction resulted in new RUI assignments for existing relationships:eipthelial_cell_shape_of -->
epithelial_cell_shape_of
has_eipthelial_cell_shape --> has_epithelial_cell_shape
has_eipthelial_cell_shape --> has_epithelial_cell_shape
Source-Provided Files: Summary
()The FMA distribution includes the following. These files, along with additional information can be accessed at http://sig.biostr.washington.edu/projects/fm
Data files:
| File Name |
|---|
| fma_3.1_frames_db.sql |
| fma_3.1_frames_db.pprj |
To process FMA, fma_3.1_frames_db.sql was loaded into a MySQL database for Protegè. Protegè's export function was then used to write "classes.fma.pont" and "instances.fma.pins." The .pins and .pont files were processed for the Metathesaurus.
Not included:
All information in the file FMA, fma_3.1_frames_db.sql is processed for the Metathesaurus.
Source-Provided Files: Details
()The following is a list of elements (slots) available for FMA:
Note that plus signs ("+") in FMA values are represented as spaces (" ") in the Metathesaurus| Slot | Representation |
|---|---|
| AAL |
MRSAT.ATN="AAL_TERM" |
| Freesurfer |
MRSAT.ATN="FREESURFER_TERM" |
| Neurolex |
MRSAT.ATN="NEUROLEX_ID" |
| Non-English+equivalent |
MRCONSO.TTY="SY" [names with Language=Latin only] |
| Preferred+name |
MRCONSO.TTY="PT" |
| RadLex+ID |
MRSAT.ATN="RADLEX_ID" |
| Synonym |
MRCONSO.TTY="SY" |
| Talairach+ID |
MRSAT.ATN="TALAIRACH_ID" |
| Talairach |
MRSAT.ATN="TALAIRACH" |
| adheres+to |
MRREL.RELA="adheres_to" |
| adjacent |
MRSAT.ATN="ADJACENT" |
| afferent+to |
MRREL.RELA="afferent_to" |
| anatomical%2Farbitrary |
MRSAT.ATN="ANATOMICAL_OR_ARBITRARY" |
| anatomical+coordinate |
MRSAT.ATN="ANATOMICAL_COORDINATE" |
| arterial+supply+of |
MRREL.RELA="arterial_supply_of" |
| arterial+supply |
MRREL.RELA="has_arterial_supply" |
| articulates+with |
MRREL.RELA="articulates_with" |
| attaches+to |
MRREL.RELA="attaches_to" |
| attributed+constitutional+part |
MRREL.RELA="has_attributed_constitutional_part" |
| attributed+continuous+with |
MRREL.RELA="attributed_continuous_with" |
| attributed+part |
MRREL.RELA="has_attributed_part" |
| attributed+regional+part |
MRREL.RELA="has_attributed_regional_part" |
| bounded+by |
MRREL.RELA="bounded_by" |
| bounds |
MRREL.RELA="bounds" |
| branch+%28continuity%29 |
MRREL.RELA="has_continuation_branch" |
| branch+of |
MRREL.RELA="branch_of" |
| branch |
MRREL.RELA="has_branch" |
| cell+appendage+type |
MRSAT.ATN="CELL_APPENDAGE_TYPE" |
| cell+connectivity |
MRREL.RELA="has_cell_connecting_part" |
| cell+layer |
MRSAT.ATN="CELL_LAYER" |
| cell+shape |
MRREL.RELA="has_cell_shape" |
| cell+surface+specialization |
MRREL.RELA="has_cell_surface_specialization" |
| chromosome+pair+number |
MRSAT.ATN="CHROMOSOME_PAIRS_PER_NUCLEUS" |
| connected+to |
MRSAT.ATN="CONNECTED_TO" |
| connection+type |
MRSAT.ATN="CONNECTION_TYPE" |
| constitutional+part+of |
MRREL.RELA="constitutional_part_of" |
| constitutional+part |
MRREL.RELA="has_constitutional_part" |
| contact+type |
MRSAT.ATN="CONTACT_TYPE" |
| contained+in |
MRREL.RELA="contained_in" |
| contains |
MRREL.RELA="contains" |
| continuous+with+distally |
MRREL.RELA="continuous_with_distally" |
| continuous+with+proximally |
MRREL.RELA="continuous_with_proximally" |
| continuous+with |
MRREL.RELA="continuous_with" |
| definition |
MRDEF.DEF |
| develops+from |
MRREL.RELA="develops_from" |
| dimension |
MRSAT.ATN="DIMENSION" |
| efferent+to |
MRREL.RELA="efferent_to" |
| epithelial+morphology |
MRREL.RELA="has_epithelial_cell_shape" |
| fascicular+architecture |
MRREL.RELA="has_fascicular_architecture" |
| germ+origin |
MRREL.RELA="has_germ_origin" |
| gives+rise+to |
MRREL.RELA="gives_rise_to" |
| has+boundary |
MRSAT.ATN="HAS_BOUNDARY" |
| has+mass |
MRSAT.ATN="HAS_MASS" |
| has+shape+type |
MRSAT.ATN="SHAPE_TYPE" |
| has+shape |
MRREL.RELA="has_shape" |
| inherent+3-D+shape |
MRREL.RELA="has_inherent_3d_shape" |
| input+from[used only once] |
MRREL.RELA="receives_input_from" |
| laterality |
MRSAT.ATN="LATERALITY" |
| location |
MRREL.RELA="has_location" |
| lymphatic+drainage+of |
MRREL.RELA="lymphatic_drainage_of" |
| lymphatic+drainage |
MRREL.RELA="has_lymphatic_drainage" |
| member+of |
MRREL.RELA="member_of_cluster" |
| member |
MRREL.RELA="has_member" |
| muscle+attachment |
MRREL.RELA="has_muscle_attachment" |
| muscle+insertion |
MRREL.RELA="has_muscle_insertion" |
| muscle+insertion |
MRSAT.ATN="MUSCLE_INSERTION" |
| muscle+origin |
MRREL.RELA="has_muscle_origin" |
| muscle+origin |
MRSAT.ATN="MUSCLE_ORIGIN" |
| nerve+supply+of |
MRREL.RELA="nerve_supply_of" |
| nerve+supply |
MRREL.RELA="has_nerve_supply" |
| orientation |
MRREL.RELA="has_orientation" |
| origin+of |
MRREL.RELA="origin_of" |
| part+of |
MRREL.RELA="part_of" |
| part |
MRREL.RELA="has_part" |
| partition |
MRSAT.ATN="PARTITION" |
| physical+state |
MRREL.RELA="has_physical_state" |
| polarity |
MRSAT.ATN="POLARITY" |
| primary+segmental+supply+of |
MRREL.RELA="primary_segmental_supply_of" |
| primary+segmental+supply |
MRREL.RELA="has_primary_segmental_supply" |
| receives+attachment |
MRREL.RELA="receives_attachment" |
| receives+input+from |
MRREL.RELA="receives_input_from" |
| regional+part+of |
MRREL.RELA="regional_part_of" |
| regional+part |
MRREL.RELA="has_regional_part" |
| secondary+segmental+supply+of |
MRREL.RELA="secondary_segmental_supply_of" |
| secondary+segmental+supply |
MRREL.RELA="has_secondary_segmental_supply" |
| segmental+composition+of |
MRREL.RELA="segmental_composition_of" |
| segmental+composition |
MRREL.RELA="has_segmental_composition" |
| segmental+supply+of |
MRREL.RELA="segmental_supply_of" |
| segmental+supply |
MRREL.RELA="has_segmental_supply" |
| sends+output+to |
MRREL.RELA="sends_output_to" |
| shared%2Funshared |
MRSAT.ATN="SHARED_OR_UNSHARED" |
| state+of+determination |
MRSAT.ATN="STATE_OF_DETERMINATION" |
| surrounded+by |
MRREL.RELA="surrounded_by" |
| surrounds |
MRREL.RELA="surrounds" |
| systemic+part+of |
MRREL.RELA="systemic_part_of" |
| systemic+part |
MRREL.RELA="has_systemic_part" |
| tributary+of |
MRREL.RELA="tributary_of" |
| tributary |
MRREL.RELA="has_tributary" |
| venous+drainage+of |
MRREL.RELA="venous_drainage_of" |
| venous+drainage |
MRREL.RELA="has_venous_drainage" |
| view |
MRSAT.ATN="VIEW" |
