Skip Navigation Bar
 

Unified Medical Language System® (UMLS®)

2011AA Foundational Model of Anatomy Source Information




Skip to: Notes, Summary of Changes, Summary of Source-Provided Files Source-Provided File Details

Notes

Summary of Changes:

  (return to top)

FMA3_1 inlcudes the following new data types:

Term Types:
IS (suppressible = "O")
OP (suppressible = "O")

RELAs:
articulates_with
adheres_to/has_adherent
has_part/part_of

Hierarchical RELA (previously null):
isa

Attributes:
AAL_TERM
ANATOMICAL_COORDINATE (replaces COORDINATE)
FREESURFER_TERM
NEUROLEX_ID
RADLEX_ID
TALAIRACH
TALAIRACH_ID

The following data types were deleted in FMA3_1:

RELAs:
has_homonym/homonym_for

Attributes:
COORDINATE

The following RELAs were updated due to a spelling error.  This correction resulted in new RUI assignments for existing relationships:
eipthelial_cell_shape_of --> epithelial_cell_shape_of
has_eipthelial_cell_shape --> has_epithelial_cell_shape

Source-Provided Files: Summary

  (return to top)

The FMA distribution includes the following. These files, along with additional information can be accessed at http://sig.biostr.washington.edu/projects/fm

Data files:

File Name
fma_3.1_frames_db.sql
fma_3.1_frames_db.pprj

To process FMA, fma_3.1_frames_db.sql was loaded into a MySQL database for Protegè.  Protegè's export function was then used to write "classes.fma.pont" and "instances.fma.pins."  The .pins and .pont files were processed for the Metathesaurus.

Not included

All information in the file FMA, fma_3.1_frames_db.sql is processed for the Metathesaurus.

Source-Provided Files: Details

  (return to top)

The following is a list of elements (slots) available for FMA:

Note that plus signs ("+") in FMA values are represented as spaces (" ") in the Metathesaurus


Slot Representation
AAL
MRSAT.ATN="AAL_TERM"
Freesurfer
MRSAT.ATN="FREESURFER_TERM"
Neurolex
MRSAT.ATN="NEUROLEX_ID"
Non-English+equivalent
MRCONSO.TTY="SY" [names with Language=Latin only]
Preferred+name
MRCONSO.TTY="PT"
RadLex+ID
MRSAT.ATN="RADLEX_ID"
Synonym
MRCONSO.TTY="SY"
Talairach+ID
MRSAT.ATN="TALAIRACH_ID"
Talairach
MRSAT.ATN="TALAIRACH"
adheres+to
MRREL.RELA="adheres_to"
adjacent
MRSAT.ATN="ADJACENT"
afferent+to
MRREL.RELA="afferent_to"
anatomical%2Farbitrary
MRSAT.ATN="ANATOMICAL_OR_ARBITRARY"
anatomical+coordinate
MRSAT.ATN="ANATOMICAL_COORDINATE"
arterial+supply+of
MRREL.RELA="arterial_supply_of"
arterial+supply
MRREL.RELA="has_arterial_supply"
articulates+with
MRREL.RELA="articulates_with"
attaches+to
MRREL.RELA="attaches_to"
attributed+constitutional+part
MRREL.RELA="has_attributed_constitutional_part"
attributed+continuous+with
MRREL.RELA="attributed_continuous_with"
attributed+part
MRREL.RELA="has_attributed_part"
attributed+regional+part
MRREL.RELA="has_attributed_regional_part"
bounded+by
MRREL.RELA="bounded_by"
bounds
MRREL.RELA="bounds"
branch+%28continuity%29
MRREL.RELA="has_continuation_branch"
branch+of
MRREL.RELA="branch_of"
branch
MRREL.RELA="has_branch"
cell+appendage+type
MRSAT.ATN="CELL_APPENDAGE_TYPE"
cell+connectivity
MRREL.RELA="has_cell_connecting_part"
cell+layer
MRSAT.ATN="CELL_LAYER"
cell+shape
MRREL.RELA="has_cell_shape"
cell+surface+specialization
MRREL.RELA="has_cell_surface_specialization"
chromosome+pair+number
MRSAT.ATN="CHROMOSOME_PAIRS_PER_NUCLEUS"
connected+to
MRSAT.ATN="CONNECTED_TO"
connection+type
MRSAT.ATN="CONNECTION_TYPE"
constitutional+part+of
MRREL.RELA="constitutional_part_of"
constitutional+part
MRREL.RELA="has_constitutional_part"
contact+type
MRSAT.ATN="CONTACT_TYPE"
contained+in
MRREL.RELA="contained_in"
contains
MRREL.RELA="contains"
continuous+with+distally
MRREL.RELA="continuous_with_distally"
continuous+with+proximally
MRREL.RELA="continuous_with_proximally"
continuous+with
MRREL.RELA="continuous_with"
definition
MRDEF.DEF
develops+from
MRREL.RELA="develops_from"
dimension
MRSAT.ATN="DIMENSION"
efferent+to
MRREL.RELA="efferent_to"
epithelial+morphology
MRREL.RELA="has_epithelial_cell_shape"
fascicular+architecture
MRREL.RELA="has_fascicular_architecture"
germ+origin
MRREL.RELA="has_germ_origin"
gives+rise+to
MRREL.RELA="gives_rise_to"
has+boundary
MRSAT.ATN="HAS_BOUNDARY"
has+mass
MRSAT.ATN="HAS_MASS"
has+shape+type
MRSAT.ATN="SHAPE_TYPE"
has+shape
MRREL.RELA="has_shape"
inherent+3-D+shape
MRREL.RELA="has_inherent_3d_shape"
input+from[used only once]
MRREL.RELA="receives_input_from"
laterality
MRSAT.ATN="LATERALITY"
location
MRREL.RELA="has_location"
lymphatic+drainage+of
MRREL.RELA="lymphatic_drainage_of"
lymphatic+drainage
MRREL.RELA="has_lymphatic_drainage"
member+of
MRREL.RELA="member_of_cluster"
member
MRREL.RELA="has_member"
muscle+attachment
MRREL.RELA="has_muscle_attachment"
muscle+insertion
MRREL.RELA="has_muscle_insertion"
muscle+insertion
MRSAT.ATN="MUSCLE_INSERTION"
muscle+origin
MRREL.RELA="has_muscle_origin"
muscle+origin
MRSAT.ATN="MUSCLE_ORIGIN"
nerve+supply+of
MRREL.RELA="nerve_supply_of"
nerve+supply
MRREL.RELA="has_nerve_supply"
orientation
MRREL.RELA="has_orientation"
origin+of
MRREL.RELA="origin_of"
part+of
MRREL.RELA="part_of"
part
MRREL.RELA="has_part"
partition
MRSAT.ATN="PARTITION"
physical+state
MRREL.RELA="has_physical_state"
polarity
MRSAT.ATN="POLARITY"
primary+segmental+supply+of
MRREL.RELA="primary_segmental_supply_of"
primary+segmental+supply
MRREL.RELA="has_primary_segmental_supply"
receives+attachment
MRREL.RELA="receives_attachment"
receives+input+from
MRREL.RELA="receives_input_from"
regional+part+of
MRREL.RELA="regional_part_of"
regional+part
MRREL.RELA="has_regional_part"
secondary+segmental+supply+of
MRREL.RELA="secondary_segmental_supply_of"
secondary+segmental+supply
MRREL.RELA="has_secondary_segmental_supply"
segmental+composition+of
MRREL.RELA="segmental_composition_of"
segmental+composition
MRREL.RELA="has_segmental_composition"
segmental+supply+of
MRREL.RELA="segmental_supply_of"
segmental+supply
MRREL.RELA="has_segmental_supply"
sends+output+to
MRREL.RELA="sends_output_to"
shared%2Funshared
MRSAT.ATN="SHARED_OR_UNSHARED"
state+of+determination
MRSAT.ATN="STATE_OF_DETERMINATION"
surrounded+by
MRREL.RELA="surrounded_by"
surrounds
MRREL.RELA="surrounds"
systemic+part+of
MRREL.RELA="systemic_part_of"
systemic+part
MRREL.RELA="has_systemic_part"
tributary+of
MRREL.RELA="tributary_of"
tributary
MRREL.RELA="has_tributary"
venous+drainage+of
MRREL.RELA="venous_drainage_of"
venous+drainage
MRREL.RELA="has_venous_drainage"
view
MRSAT.ATN="VIEW"